Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT5G38391.1 | Thale cress | cytosol | 29.49 | 35.96 |
| AT5G38396.1 | Thale cress | cytosol | 72.81 | 34.2 |
| AT3G58910.1 | Thale cress | cytosol, nucleus, peroxisome | 27.19 | 27.57 |
| AT4G13960.2 | Thale cress | cytosol | 58.06 | 27.16 |
| AT3G58820.1 | Thale cress | cytosol | 50.69 | 26.63 |
| AT1G52650.1 | Thale cress | cytosol | 55.76 | 26.02 |
| AT3G59000.1 | Thale cress | cytosol | 57.6 | 25.46 |
| AT5G38390.1 | Thale cress | vacuole | 51.61 | 24.56 |
| AT5G38386.2 | Thale cress | cytosol | 44.7 | 24.07 |
| AT3G03040.1 | Thale cress | cytosol | 50.69 | 23.31 |
| AT3G58880.1 | Thale cress | cytosol | 47.93 | 22.91 |
| AT3G58900.4 | Thale cress | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, vacuole | 47.47 | 22.15 |
| AT3G58860.1 | Thale cress | cytosol | 46.54 | 22.1 |
| AT3G58930.1 | Thale cress | cytosol | 47.93 | 21.58 |
| AT4G14103.2 | Thale cress | cytosol | 43.32 | 21.22 |
| AT3G03030.1 | Thale cress | cytosol | 46.08 | 21.1 |
| AT3G58950.1 | Thale cress | cytosol | 39.63 | 20.62 |
| AT4G14096.2 | Thale cress | cytosol | 42.86 | 19.87 |
| AT3G59170.1 | Thale cress | cytosol | 42.4 | 19.45 |
| AT3G59160.1 | Thale cress | cytosol | 41.47 | 19.4 |
| AT3G59230.1 | Thale cress | cytosol | 43.78 | 19.35 |
| AT3G59210.1 | Thale cress | cytosol, nucleus, peroxisome | 42.86 | 19.21 |
| AT2G42730.1 | Thale cress | cytosol | 39.17 | 18.6 |
| AT2G42720.1 | Thale cress | cytosol, nucleus, peroxisome | 37.79 | 18.51 |
| AT1G58310.1 | Thale cress | cytosol | 42.4 | 18.22 |
| AT3G59190.2 | Thale cress | cytosol, nucleus, plastid | 42.4 | 17.73 |
| AT3G59200.1 | Thale cress | cytosol | 42.4 | 17.69 |
| AT3G49150.1 | Thale cress | cytosol | 37.79 | 17.56 |
| AT3G59250.1 | Thale cress | cytosol | 33.18 | 16.94 |
| AT3G58940.1 | Thale cress | cytosol | 47.93 | 16.83 |
| AT3G59240.1 | Thale cress | cytosol | 37.79 | 16.27 |
| AT3G59150.1 | Thale cress | cytosol | 34.56 | 15.79 |
| AT5G41630.1 | Thale cress | cytosol | 32.72 | 15.6 |
| AT4G00320.1 | Thale cress | cytosol | 35.48 | 15.19 |
| AT5G41840.1 | Thale cress | cytosol | 37.79 | 15.19 |
| AT5G41830.2 | Thale cress | cytosol | 35.94 | 15.18 |
| AT3G59180.1 | Thale cress | plasma membrane | 28.57 | 13.05 |
| GSMUA_Achr2P13780_001 | Banana | cytosol | 24.42 | 12.9 |
| AT1G56610.1 | Thale cress | endoplasmic reticulum | 30.88 | 12.52 |
| AT3G59270.1 | Thale cress | cytosol | 16.13 | 10.45 |
| AT5G35926.2 | Thale cress | nucleus | 17.97 | 9.01 |
| AT3G58890.1 | Thale cress | extracellular | 8.76 | 6.48 |
Protein Annotations
| ArrayExpress:AT5G38392 | EnsemblPlants:AT5G38392.1 | EnsemblPlantsGene:AT5G38392 | EntrezGene:28721228 | Gene3D:3.80.10.10 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | InterPro:IPR001810 | InterPro:IPR032675 |
| InterPro:LRR_dom_sf | PANTHER:PTHR31639 | PANTHER:PTHR31639:SF6 | PFAM:PF00646 | PFscan:PS50181 | ProteinID:ANM69057.1 |
| RefSeq:NP_001330761.1 | SUPFAM:SSF81383 | UniParc:UPI000848BEB5 | UniProt:A0A1P8BBT1 | MapMan:35.1 | : |
Description
F-box/RNI superfamily protein [Source:UniProtKB/TrEMBL;Acc:A0A1P8BBT1]
Coordinates
chr5:+:15369685..15370338
Molecular Weight (calculated)
24708.4 Da
IEP (calculated)
4.950
GRAVY (calculated)
0.132
Length
217 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLLSNLPDE LLCHILSFFT TKEAALTSVL SKRWRHLFAL VPNLDIDDSM FLYPEEGKRD RNEIQQSFVE FVDRLLLLQG KSPTRKVSLK CISMSDPDRL
101: DDWISNVLAR GVSELDLSID LCMDEYILLS SKRFESKNLV RLKLHRICIG QPENPIGWLA GGILLPMLKT VLLESVGFYV DEVFLRALPV LEELVMVDVF
201: CSGALRMSSC QMQASRP
101: DDWISNVLAR GVSELDLSID LCMDEYILLS SKRFESKNLV RLKLHRICIG QPENPIGWLA GGILLPMLKT VLLESVGFYV DEVFLRALPV LEELVMVDVF
201: CSGALRMSSC QMQASRP
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.