Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 2
- cytosol 2
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT3G59210.1 | Thale cress | cytosol, nucleus, peroxisome | 57.64 | 58.47 |
| AT4G14096.2 | Thale cress | cytosol | 53.77 | 56.41 |
| AT3G59250.1 | Thale cress | cytosol | 47.86 | 55.29 |
| AT4G14103.2 | Thale cress | cytosol | 48.47 | 53.72 |
| AT3G59200.1 | Thale cress | cytosol | 52.95 | 50.0 |
| AT1G58310.1 | Thale cress | cytosol | 50.71 | 49.31 |
| AT3G59160.1 | Thale cress | cytosol | 45.62 | 48.28 |
| AT3G59240.1 | Thale cress | cytosol | 49.08 | 47.82 |
| AT3G59170.1 | Thale cress | cytosol | 45.21 | 46.93 |
| AT3G59190.2 | Thale cress | cytosol, nucleus, plastid | 49.49 | 46.82 |
| AT3G49150.1 | Thale cress | cytosol | 44.2 | 46.47 |
| AT3G59270.1 | Thale cress | cytosol | 31.36 | 45.97 |
| AT3G59180.1 | Thale cress | plasma membrane | 43.79 | 45.26 |
| AT4G00320.1 | Thale cress | cytosol | 45.82 | 44.38 |
| AT5G41830.2 | Thale cress | cytosol | 46.23 | 44.16 |
| AT5G41840.1 | Thale cress | cytosol | 48.27 | 43.89 |
| AT5G38392.1 | Thale cress | cytosol | 19.35 | 43.78 |
| AT3G58900.4 | Thale cress | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, vacuole | 40.12 | 42.37 |
| AT3G59000.1 | Thale cress | cytosol | 40.53 | 40.53 |
| AT4G13960.2 | Thale cress | cytosol | 38.29 | 40.52 |
| AT5G38391.1 | Thale cress | cytosol | 14.66 | 40.45 |
| AT2G42720.1 | Thale cress | cytosol, nucleus, peroxisome | 36.46 | 40.41 |
| AT5G35926.2 | Thale cress | nucleus | 35.23 | 39.95 |
| AT5G41630.1 | Thale cress | cytosol | 36.86 | 39.78 |
| AT5G38386.2 | Thale cress | cytosol | 32.59 | 39.7 |
| AT5G38390.1 | Thale cress | vacuole | 36.86 | 39.69 |
| AT5G38396.1 | Thale cress | cytosol | 37.27 | 39.61 |
| AT2G42730.1 | Thale cress | cytosol | 36.86 | 39.61 |
| AT3G58950.1 | Thale cress | cytosol | 33.4 | 39.33 |
| AT1G52650.1 | Thale cress | cytosol | 36.86 | 38.92 |
| AT3G03040.1 | Thale cress | cytosol | 37.07 | 38.56 |
| AT3G58860.1 | Thale cress | cytosol | 35.85 | 38.51 |
| AT3G58820.1 | Thale cress | cytosol | 31.57 | 37.53 |
| AT3G58880.1 | Thale cress | cytosol | 34.22 | 37.0 |
| AT3G58910.1 | Thale cress | cytosol, nucleus, peroxisome | 16.09 | 36.92 |
| AT3G03030.1 | Thale cress | cytosol | 35.44 | 36.71 |
| AT3G58930.1 | Thale cress | cytosol | 35.03 | 35.68 |
| AT3G59150.1 | Thale cress | cytosol | 34.42 | 35.58 |
| AT3G58890.1 | Thale cress | extracellular | 20.16 | 33.79 |
| AT1G56610.1 | Thale cress | endoplasmic reticulum | 34.62 | 31.78 |
| AT3G58940.1 | Thale cress | cytosol | 33.4 | 26.54 |
| GSMUA_Achr2P13780_001 | Banana | cytosol | 19.96 | 23.84 |
Protein Annotations
| Gene3D:3.80.10.10 | MapMan:35.1 | EntrezGene:825092 | ProteinID:AEE79894.1 | ArrayExpress:AT3G59230 | EnsemblPlantsGene:AT3G59230 |
| RefSeq:AT3G59230 | TAIR:AT3G59230 | RefSeq:AT3G59230-TAIR-G | EnsemblPlants:AT3G59230.1 | TAIR:AT3G59230.1 | Unigene:At.54001 |
| ProteinID:CAB91593.1 | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | InterPro:FBD | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | InterPro:IPR001810 | InterPro:IPR032675 | InterPro:LRR_dom_sf | InterPro:Leu-rich_rpt_2 |
| RefSeq:NP_191482.1 | PFAM:PF00646 | PFAM:PF07723 | PO:PO:0000293 | PANTHER:PTHR31639 | PANTHER:PTHR31639:SF6 |
| UniProt:Q9LX48 | SMART:SM00256 | SMART:SM00579 | SUPFAM:SSF52047 | SUPFAM:SSF81383 | UniParc:UPI00000A5F3A |
| SEG:seg | : | : | : | : | : |
Description
Putative F-box/LRR-repeat protein At3g59230 [Source:UniProtKB/Swiss-Prot;Acc:Q9LX48]
Coordinates
chr3:-:21895948..21897787
Molecular Weight (calculated)
55163.7 Da
IEP (calculated)
4.946
GRAVY (calculated)
0.055
Length
491 amino acids
Sequence
(BLAST)
(BLAST)
001: MNSKKLNIGP KDIINSLPEA LIYHILSFLS TKEAAITSLL SRKWRYFFAF VPNLDFDDPV RMQPDMGNQE ETEIHTSFMD FVDRVLALRG NSHVNKFSLK
101: CGNGVDGVGV TRWILNTLEL SVSELDLSIA SDTTYLFPSK VFVSKSLVRL RIEARNGLAF GSLVIDVGDV SLPKLKTLYL DSVELDYQII CLAKLLSGCH
201: VLEELVMIDV VWNFWESCSA SIPTLKRLTF FTEEGWNNPP PSVTFDNPAL VYFEYTDTVA LKYEKVNFDS LVEARLGLRV GYEESENPIQ VPFGFPFPLI
301: EYAMVGDATD LLMGIRNVQV LYLYASTVEV LTFRCKAIPI FNNLTRLTIE SNTKVGWDSL PNLLKNCPNL KTLVFQGLLH KATDRCGDMC PCKPPENIHT
401: CLSSSPVKVL EILKFGEIND KTELEQTKHF LELMPHLEQL NIYYDTSVDD NLVKVSKQLQ EIPGVASAKC KVQVISDNLT LSVTLPSSSS I
101: CGNGVDGVGV TRWILNTLEL SVSELDLSIA SDTTYLFPSK VFVSKSLVRL RIEARNGLAF GSLVIDVGDV SLPKLKTLYL DSVELDYQII CLAKLLSGCH
201: VLEELVMIDV VWNFWESCSA SIPTLKRLTF FTEEGWNNPP PSVTFDNPAL VYFEYTDTVA LKYEKVNFDS LVEARLGLRV GYEESENPIQ VPFGFPFPLI
301: EYAMVGDATD LLMGIRNVQV LYLYASTVEV LTFRCKAIPI FNNLTRLTIE SNTKVGWDSL PNLLKNCPNL KTLVFQGLLH KATDRCGDMC PCKPPENIHT
401: CLSSSPVKVL EILKFGEIND KTELEQTKHF LELMPHLEQL NIYYDTSVDD NLVKVSKQLQ EIPGVASAKC KVQVISDNLT LSVTLPSSSS I
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.