Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT5G38392.1 | Thale cress | cytosol | 35.96 | 29.49 |
| AT3G58910.1 | Thale cress | cytosol, nucleus, peroxisome | 28.09 | 23.36 |
| AT5G38390.1 | Thale cress | vacuole | 57.87 | 22.59 |
| AT3G59000.1 | Thale cress | cytosol | 57.3 | 20.77 |
| AT5G38386.2 | Thale cress | cytosol | 44.94 | 19.85 |
| AT1G52650.1 | Thale cress | cytosol | 51.69 | 19.78 |
| AT4G13960.2 | Thale cress | cytosol | 50.56 | 19.4 |
| AT5G38396.1 | Thale cress | cytosol | 48.88 | 18.83 |
| AT3G58860.1 | Thale cress | cytosol | 46.07 | 17.94 |
| AT3G58820.1 | Thale cress | cytosol | 40.45 | 17.43 |
| AT3G58900.4 | Thale cress | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, vacuole | 43.82 | 16.77 |
| AT3G58930.1 | Thale cress | cytosol | 44.94 | 16.6 |
| AT3G58880.1 | Thale cress | cytosol | 41.57 | 16.3 |
| AT3G03040.1 | Thale cress | cytosol | 39.89 | 15.04 |
| AT3G49150.1 | Thale cress | cytosol | 38.76 | 14.78 |
| AT3G59230.1 | Thale cress | cytosol | 40.45 | 14.66 |
| AT3G58950.1 | Thale cress | cytosol | 34.27 | 14.63 |
| AT3G59210.1 | Thale cress | cytosol, nucleus, peroxisome | 38.2 | 14.05 |
| AT4G14103.2 | Thale cress | cytosol | 34.83 | 14.0 |
| AT3G59200.1 | Thale cress | cytosol | 40.45 | 13.85 |
| AT3G59160.1 | Thale cress | cytosol | 35.96 | 13.79 |
| AT3G59170.1 | Thale cress | cytosol | 36.52 | 13.74 |
| AT3G59190.2 | Thale cress | cytosol, nucleus, plastid | 39.33 | 13.49 |
| AT3G59180.1 | Thale cress | plasma membrane | 35.96 | 13.47 |
| AT4G14096.2 | Thale cress | cytosol | 35.39 | 13.46 |
| AT3G03030.1 | Thale cress | cytosol | 35.39 | 13.29 |
| AT3G59240.1 | Thale cress | cytosol | 37.08 | 13.1 |
| AT2G42720.1 | Thale cress | cytosol, nucleus, peroxisome | 32.58 | 13.09 |
| AT2G42730.1 | Thale cress | cytosol | 32.58 | 12.69 |
| AT1G58310.1 | Thale cress | cytosol | 35.39 | 12.48 |
| AT4G00320.1 | Thale cress | cytosol | 34.83 | 12.23 |
| AT3G59150.1 | Thale cress | cytosol | 32.02 | 12.0 |
| AT5G41830.2 | Thale cress | cytosol | 34.27 | 11.87 |
| AT3G59250.1 | Thale cress | cytosol | 28.09 | 11.76 |
| AT5G41630.1 | Thale cress | cytosol | 29.78 | 11.65 |
| AT3G58940.1 | Thale cress | cytosol | 39.89 | 11.49 |
| AT5G41840.1 | Thale cress | cytosol | 34.83 | 11.48 |
| AT5G35926.2 | Thale cress | nucleus | 25.84 | 10.62 |
| AT3G58890.1 | Thale cress | extracellular | 15.73 | 9.56 |
| AT3G59270.1 | Thale cress | cytosol | 17.98 | 9.55 |
| AT1G56610.1 | Thale cress | endoplasmic reticulum | 28.65 | 9.53 |
| GSMUA_Achr2P13780_001 | Banana | cytosol | 18.54 | 8.03 |
Protein Annotations
| ArrayExpress:AT5G38391 | EnsemblPlants:AT5G38391.1 | EnsemblPlantsGene:AT5G38391 | EntrezGene:28721227 | PANTHER:PTHR31639 | PANTHER:PTHR31639:SF6 |
| ProteinID:ANM70755.1 | RefSeq:NP_001332340.1 | SEG:seg | UniParc:UPI00084849BD | UniProt:A0A1P8BGP4 | MapMan:35.1 |
Description
F-box/RNI superfamily protein [Source:UniProtKB/TrEMBL;Acc:A0A1P8BGP4]
Coordinates
chr5:+:15368254..15368851
Molecular Weight (calculated)
20022.6 Da
IEP (calculated)
4.699
GRAVY (calculated)
0.316
Length
178 amino acids
Sequence
(BLAST)
(BLAST)
001: MGKGDREDIR ELFMDFVDRV LALQGDSPIK KVSINCVGVD SVRVDAWIRN VMLRGVSELV LLIVLDVQSI GKKFWVPPKC FESKKLVKLE IGYGVDIGWL
101: DGSFFLLMLK TLVLRLVQLS ADKFKILLHD LPALEELAMG YVTWSEDDAV VSDANTFSVD TPSLTYFSYS DLLLKTTL
101: DGSFFLLMLK TLVLRLVQLS ADKFKILLHD LPALEELAMG YVTWSEDDAV VSDANTFSVD TPSLTYFSYS DLLLKTTL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.