Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- plasma membrane 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT5G41840.1 | Thale cress | cytosol | 76.21 | 61.11 |
| AT4G00320.1 | Thale cress | cytosol | 51.5 | 43.98 |
| AT5G41830.2 | Thale cress | cytosol | 52.19 | 43.97 |
| AT5G41630.1 | Thale cress | cytosol | 41.11 | 39.12 |
| AT3G59250.1 | Thale cress | cytosol | 36.95 | 37.65 |
| AT3G59210.1 | Thale cress | cytosol, nucleus, peroxisome | 41.11 | 36.78 |
| AT1G58310.1 | Thale cress | cytosol | 41.11 | 35.25 |
| AT3G59230.1 | Thale cress | cytosol | 39.95 | 35.23 |
| AT4G14096.2 | Thale cress | cytosol | 37.64 | 34.83 |
| AT3G59180.1 | Thale cress | plasma membrane | 37.64 | 34.32 |
| AT4G14103.2 | Thale cress | cytosol | 33.26 | 32.51 |
| AT3G59200.1 | Thale cress | cytosol | 38.34 | 31.92 |
| AT3G59240.1 | Thale cress | cytosol | 36.95 | 31.75 |
| AT3G59270.1 | Thale cress | cytosol | 24.48 | 31.64 |
| AT3G59170.1 | Thale cress | cytosol | 34.41 | 31.5 |
| AT3G59190.2 | Thale cress | cytosol, nucleus, plastid | 37.64 | 31.41 |
| AT3G59160.1 | Thale cress | cytosol | 33.26 | 31.03 |
| AT3G49150.1 | Thale cress | cytosol | 33.26 | 30.84 |
| AT3G58890.1 | Thale cress | extracellular | 20.55 | 30.38 |
| AT3G58910.1 | Thale cress | cytosol, nucleus, peroxisome | 14.32 | 28.97 |
| AT2G42720.1 | Thale cress | cytosol, nucleus, peroxisome | 29.1 | 28.44 |
| AT5G38390.1 | Thale cress | vacuole | 29.33 | 27.85 |
| AT3G58900.4 | Thale cress | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, vacuole | 29.79 | 27.74 |
| AT2G42730.1 | Thale cress | cytosol | 28.87 | 27.35 |
| AT5G38396.1 | Thale cress | cytosol | 28.41 | 26.62 |
| AT3G58950.1 | Thale cress | cytosol | 25.17 | 26.14 |
| AT3G59000.1 | Thale cress | cytosol | 29.33 | 25.87 |
| AT5G38391.1 | Thale cress | cytosol | 10.62 | 25.84 |
| AT3G58930.1 | Thale cress | cytosol | 28.64 | 25.73 |
| AT5G38386.2 | Thale cress | cytosol | 23.56 | 25.31 |
| AT1G52650.1 | Thale cress | cytosol | 27.02 | 25.16 |
| AT3G03030.1 | Thale cress | cytosol | 27.48 | 25.11 |
| AT3G03040.1 | Thale cress | cytosol | 27.25 | 25.0 |
| AT4G13960.2 | Thale cress | cytosol | 26.33 | 24.57 |
| AT3G58860.1 | Thale cress | cytosol | 25.87 | 24.51 |
| AT3G58820.1 | Thale cress | cytosol | 23.09 | 24.21 |
| AT3G58880.1 | Thale cress | cytosol | 24.94 | 23.79 |
| AT3G59150.1 | Thale cress | cytosol | 25.64 | 23.37 |
| AT1G56610.1 | Thale cress | endoplasmic reticulum | 24.71 | 20.0 |
| AT5G38392.1 | Thale cress | cytosol | 9.01 | 17.97 |
| AT3G58940.1 | Thale cress | cytosol | 24.71 | 17.31 |
| GSMUA_Achr2P13780_001 | Banana | cytosol | 14.09 | 14.84 |
Protein Annotations
| ArrayExpress:AT5G35926 | EnsemblPlants:AT5G35926.2 | EnsemblPlantsGene:AT5G35926 | EntrezGene:3771311 | Gene3D:3.80.10.10 | InterPro:FBD |
| InterPro:IPR032675 | InterPro:LRR_dom_sf | InterPro:Leu-rich_rpt_2 | PANTHER:PTHR31639 | PANTHER:PTHR31639:SF6 | PFAM:PF07723 |
| ProteinID:ANM70591.1 | RefSeq:AT5G35926 | RefSeq:AT5G35926-TAIR-G | RefSeq:NP_001332188.1 | SEG:seg | SMART:SM00579 |
| SUPFAM:SSF52047 | TAIR:AT5G35926 | UniParc:UPI00084966D9 | UniProt:A0A1P8BG75 | MapMan:35.1 | : |
Description
Protein with RNI-like/FBD-like domains [Source:TAIR;Acc:AT5G35926]
Coordinates
chr5:+:14062676..14066321
Molecular Weight (calculated)
49562.2 Da
IEP (calculated)
5.007
GRAVY (calculated)
-0.359
Length
433 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLTDPDPDR WFTDPADPDS CFTDHAHQPL ALDLYIPSSR DCCENSSFNP LPSKIFESKA LVWLKIQFQD GVSIDVKRGV SLPKLKTLHL DYFKIEPSKF
101: NKLLSGCHAL EELVLINLMW ADSSGYKVCP VTVSIPTLKR LKFCRSEDFY EGKFHEYEDY DEENIKKGVS LSFDNPNLVY LEYSDVIVDK YKQVRFDSLV
201: EANLGLRKNQ AEPDKINVTK LLMGLHNVKI LYLSNDILEV LACCRERIPV FDNLLELTIK TTPYVGWKSL QPLLKSYPSL ETLVFEVLYT AFRSTVETFL
301: SIQFDYETDS VMFQGLHHKY TKKCGDKDGC LCKYENDLGA KKKNVRTCLT SSPVKVLKIL KFGETFEDED EDGLDVDHDD YDDEDDVSCD EDVMKVFKKL
401: QKLPRVASAK CEVQIKSKNL SLSSTSTKRG TLL
101: NKLLSGCHAL EELVLINLMW ADSSGYKVCP VTVSIPTLKR LKFCRSEDFY EGKFHEYEDY DEENIKKGVS LSFDNPNLVY LEYSDVIVDK YKQVRFDSLV
201: EANLGLRKNQ AEPDKINVTK LLMGLHNVKI LYLSNDILEV LACCRERIPV FDNLLELTIK TTPYVGWKSL QPLLKSYPSL ETLVFEVLYT AFRSTVETFL
301: SIQFDYETDS VMFQGLHHKY TKKCGDKDGC LCKYENDLGA KKKNVRTCLT SSPVKVLKIL KFGETFEDED EDGLDVDHDD YDDEDDVSCD EDVMKVFKKL
401: QKLPRVASAK CEVQIKSKNL SLSSTSTKRG TLL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.