Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 4
- cytosol 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| extracellular:
29876421
|
msms PMID:
29876421
doi
Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400002698 | Potato | mitochondrion | 92.45 | 74.89 |
| KRG91243 | Soybean | cytosol | 31.25 | 25.64 |
| GSMUA_Achr2P13780_001 | Banana | cytosol | 22.92 | 21.41 |
Protein Annotations
| MapMan:35.1 | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR001810 | UniProt:K4CHA7 | InterPro:Leu-rich_rpt_2 | PFAM:PF00646 | PFAM:PF07723 | PFscan:PS50181 |
| PANTHER:PTHR32212 | PANTHER:PTHR32212:SF234 | SUPFAM:SSF52047 | SUPFAM:SSF81383 | EnsemblPlantsGene:Solyc07g064260.2 | EnsemblPlants:Solyc07g064260.2.1 |
| UniParc:UPI000276C423 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr7:+:66478066..66482006
Molecular Weight (calculated)
43974.6 Da
IEP (calculated)
6.854
GRAVY (calculated)
0.147
Length
384 amino acids
Sequence
(BLAST)
(BLAST)
001: MVTVVSRSRW HTINSFKRHT TLEVHNPEGG EDEISNLPDS ILLHILSYLP TRDVVGTCIL STRWKNLWTC VENIDFDDSF LYSSRVFGYP MKVTSFMHLV
101: HRFLQLREKS VIKKFRLSCR VCFSASHVCS WLSTVIRHNV QDLDLCLFVE EPFMLLQCVS SCKTLTSLKL EMNCVLELPT STYFPFLKIL HLCLVTFRDD
201: SSTQRLLSSC PMLQELAILD CEWMNLKQVA ISISSLKSLI IDDLPFFGST DDLNGCKIKI DAENLTFFKY SGYLSNEICL YSISSSANAS IHIPILYEKR
301: NQIAFRAVEL FRGLHKISAA RISSRAIESL FIADIEKDRL PVFYSLTHLE LSMELENHSI GPLMELLQCL PKLQSLHFSE MTGA
101: HRFLQLREKS VIKKFRLSCR VCFSASHVCS WLSTVIRHNV QDLDLCLFVE EPFMLLQCVS SCKTLTSLKL EMNCVLELPT STYFPFLKIL HLCLVTFRDD
201: SSTQRLLSSC PMLQELAILD CEWMNLKQVA ISISSLKSLI IDDLPFFGST DDLNGCKIKI DAENLTFFKY SGYLSNEICL YSISSSANAS IHIPILYEKR
301: NQIAFRAVEL FRGLHKISAA RISSRAIESL FIADIEKDRL PVFYSLTHLE LSMELENHSI GPLMELLQCL PKLQSLHFSE MTGA
001: MDSEKMDLFS KLPDEVISHI LSSLPTKEAA STSVLAKKWR YLFAFVPSLD FNDSDFLHPQ EGKREKDGIL RSFMDFVDRV LALQGASPIK KFSLNVKTGV
101: DPDRVDRWIC NVLQRGVSHL ALFMDFEEEY SLPYEISVSK TLVELKTGYG VDLYLWDDDM FLPMLKTLVL ESVEFGRGQF QTLLPACPVL EELMLLNMEW
201: KDRNVILSSS SLKNLKITSE DGCLGTLSFD TPNLVFLDYY DYVAEDYPIV NLKNLVEVGI NLVLTADRIN RARDNVWNLI HGIQNAEIFH ISPVTFEVLS
301: LSCEAMPVFK NLTTLNIRTV MQQGWQAMPL LLKNCPNLET LYLGGLLHTV TNKCGDVCDC IPRKKKGRSL MACPVNKIQI QGFRGTIREV HMIKHFLDFC
401: PSLKEMEIIV ETKEPTLFEI PKWLEIVEDT LMQYNEMSSC TINYRVLAPL YWRWTRK
101: DPDRVDRWIC NVLQRGVSHL ALFMDFEEEY SLPYEISVSK TLVELKTGYG VDLYLWDDDM FLPMLKTLVL ESVEFGRGQF QTLLPACPVL EELMLLNMEW
201: KDRNVILSSS SLKNLKITSE DGCLGTLSFD TPNLVFLDYY DYVAEDYPIV NLKNLVEVGI NLVLTADRIN RARDNVWNLI HGIQNAEIFH ISPVTFEVLS
301: LSCEAMPVFK NLTTLNIRTV MQQGWQAMPL LLKNCPNLET LYLGGLLHTV TNKCGDVCDC IPRKKKGRSL MACPVNKIQI QGFRGTIREV HMIKHFLDFC
401: PSLKEMEIIV ETKEPTLFEI PKWLEIVEDT LMQYNEMSSC TINYRVLAPL YWRWTRK
Arabidopsis Description
Putative F-box protein At3g58860 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXR6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.