Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, plastid, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 1
- plastid 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_19s0093g00500.t01 | Wine grape | cytosol | 58.76 | 48.99 |
| KRH22109 | Soybean | plastid | 28.84 | 25.97 |
| GSMUA_Achr2P13780_001 | Banana | cytosol | 23.99 | 21.65 |
Protein Annotations
| Gene3D:3.80.10.10 | MapMan:35.1 | EMBL:AM463584 | ProteinID:CAN74740 | ProteinID:CAN74740.1 | ProteinID:CCB57193 |
| ProteinID:CCB57193.1 | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | UniProt:F6HR85 | EMBL:FN596009 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR001810 | InterPro:IPR032675 | InterPro:LRR_dom_sf | InterPro:Leu-rich_rpt_2 |
| PFAM:PF00646 | PFAM:PF07723 | PFscan:PS50181 | PANTHER:PTHR31639 | PANTHER:PTHR31639:SF6 | SMART:SM00256 |
| SUPFAM:SSF52047 | SUPFAM:SSF81383 | UniParc:UPI0002108595 | ArrayExpress:VIT_19s0093g00430 | EnsemblPlantsGene:VIT_19s0093g00430 | EnsemblPlants:VIT_19s0093g00430.t01 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr19:-:17282803..17284294
Molecular Weight (calculated)
42785.5 Da
IEP (calculated)
4.339
GRAVY (calculated)
0.095
Length
371 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSEYEESRD IISNLPDELL CHILSFLPTK FAVGTSILSK RWRYLWASVP ILDFDDELWL NPSTLVELEE RIIMFQNFVD GVLRHSEVSC IKKFRLGYRD
101: NNLDSVYSWI CIALERRVQE LDLHLLIDWG VELPPMFFIC KTLVVVKLSC ALFLDIPTTV WLPSLKALHL KSVEYSDDDS IQKLLSGCPV LEELVIEREE
201: RDNQWVVNVS NPSLKILRIF FFTDGFAHPY EQEDQDYKVV VDAPNLEYLS ITDYLSKDYF VKDLPSLVKA FIDVEQDSEE FEESPHNGGI SYHGPIYELL
301: GRISNVKCLS LTGVTLDVSF LCPPILPTFH NMTCLEFLFI GGFNWDFLPN FLHSSPNLEA LVIETVCKYP M
101: NNLDSVYSWI CIALERRVQE LDLHLLIDWG VELPPMFFIC KTLVVVKLSC ALFLDIPTTV WLPSLKALHL KSVEYSDDDS IQKLLSGCPV LEELVIEREE
201: RDNQWVVNVS NPSLKILRIF FFTDGFAHPY EQEDQDYKVV VDAPNLEYLS ITDYLSKDYF VKDLPSLVKA FIDVEQDSEE FEESPHNGGI SYHGPIYELL
301: GRISNVKCLS LTGVTLDVSF LCPPILPTFH NMTCLEFLFI GGFNWDFLPN FLHSSPNLEA LVIETVCKYP M
001: MDLSGSRDVI SSLPDDISSH ILSFLPTKEA ASTSVLSKKW RYLFAFVPNL DLDDSVYLNP ENETEISTSF MDFVDRVLAL QGNSPLHKFS LKIGDGIDPV
101: RIIPWINNVL ERGVSDLDLH LNLESEFLLP SQVYLCKTLV WLKLRFGLYP TIDVEDVHLP KLKTLYIEAT HFEEHGVGLT KLLSGCPMLE DLVLDDISWF
201: IWDFASVSVP TLKRLRFSWQ ERDEFPKSVL LDTPNLVYLK FTDTVAGKYP KVNLDSLVEA HIDLRLLKPL LINYHQGYGE NDMVGNATDF IMRICNVKTL
301: YLSANTLQVL TYSCDAIPIF NNLTHLTIES NPRVGWQSVP GLLKNSPNLE TLIFQVIKIL KFGENSDDME KQREQIKYFL ETMPNLEKMI LYYNTPSVED
401: VTEVSSRLQR LVSKVASSTC IVQLISDNLS LSSTVSTNGL LCF
101: RIIPWINNVL ERGVSDLDLH LNLESEFLLP SQVYLCKTLV WLKLRFGLYP TIDVEDVHLP KLKTLYIEAT HFEEHGVGLT KLLSGCPMLE DLVLDDISWF
201: IWDFASVSVP TLKRLRFSWQ ERDEFPKSVL LDTPNLVYLK FTDTVAGKYP KVNLDSLVEA HIDLRLLKPL LINYHQGYGE NDMVGNATDF IMRICNVKTL
301: YLSANTLQVL TYSCDAIPIF NNLTHLTIES NPRVGWQSVP GLLKNSPNLE TLIFQVIKIL KFGENSDDME KQREQIKYFL ETMPNLEKMI LYYNTPSVED
401: VTEVSSRLQR LVSKVASSTC IVQLISDNLS LSSTVSTNGL LCF
Arabidopsis Description
F-box/RNI-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JUK8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.