Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY04140 | Canola | cytosol | 86.16 | 86.16 |
| CDY03015 | Canola | cytosol | 55.97 | 58.94 |
| CDX68112 | Canola | cytosol | 50.94 | 53.64 |
| CDX85931 | Canola | cytosol | 50.94 | 53.64 |
| CDY40611 | Canola | cytosol | 49.69 | 52.67 |
| CDY39073 | Canola | cytosol | 52.2 | 51.88 |
| CDY13521 | Canola | cytosol | 52.2 | 51.88 |
| CDY40610 | Canola | cytosol | 50.31 | 51.28 |
| CDX93698 | Canola | cytosol | 49.69 | 50.64 |
| CDX73212 | Canola | cytosol | 50.94 | 50.31 |
| CDX87650 | Canola | cytosol | 50.94 | 50.31 |
| CDY44209 | Canola | cytosol | 50.31 | 49.69 |
| CDY69121 | Canola | cytosol | 40.88 | 49.62 |
| CDX89042 | Canola | cytosol | 49.06 | 49.06 |
| CDX80590 | Canola | cytosol | 49.06 | 48.45 |
| CDX93699 | Canola | cytosol | 48.43 | 48.12 |
| CDY29370 | Canola | cytosol | 48.43 | 47.83 |
| CDY16470 | Canola | cytosol | 47.17 | 47.17 |
| CDY63159 | Canola | cytosol | 47.17 | 46.58 |
| CDY67544 | Canola | cytosol | 47.17 | 46.58 |
| CDX77280 | Canola | cytosol | 46.54 | 46.54 |
| CDY14922 | Canola | cytosol | 49.06 | 46.43 |
| CDY01389 | Canola | cytosol | 46.54 | 45.96 |
| CDY45767 | Canola | cytosol | 44.03 | 45.45 |
| CDY43408 | Canola | cytosol | 40.88 | 42.76 |
| CDY68971 | Canola | cytosol | 40.88 | 42.76 |
| CDX96963 | Canola | cytosol | 49.06 | 41.27 |
Protein Annotations
| MapMan:19.2.2.8.1.1 | Gene3D:3.30.710.10 | ProteinID:AAF82795.1 | EnsemblPlants:CDY17409 | ProteinID:CDY17409 | ProteinID:CDY17409.1 |
| ncoils:Coil | GO:GO:0006511 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 |
| GO:GO:0019538 | EnsemblPlantsGene:GSBRNA2T00095535001 | PFAM:PF01466 | PFAM:PF03931 | PIRSF:PIRSF028729 | PANTHER:PTHR11165 |
| PANTHER:PTHR11165:SF89 | GO:Q9LKJ7 | UniProt:Q9LKJ7 | InterPro:SKP1 | InterPro:SKP1-like | InterPro:SKP1-like_dim_sf |
| InterPro:SKP1/BTB/POZ_sf | SMART:SM00512 | SUPFAM:SSF54695 | SUPFAM:SSF81382 | InterPro:Skp1_comp_POZ | InterPro:Skp1_comp_dimer |
| UniPathway:UPA00143 | UniParc:UPI000009DAFA | : | : | : | : |
Description
BnaC09g21280DBnaC09g21280D protein [Source:UniProtKB/TrEMBL;Acc:Q9LKJ7]
Coordinates
chrLK032073:-:32882..33361
Molecular Weight (calculated)
17768.0 Da
IEP (calculated)
4.209
GRAVY (calculated)
-0.279
Length
159 amino acids
Sequence
(BLAST)
(BLAST)
001: MSESNKKISL ISSEGEAFEV SEAVAREFEI VAHMLEDGCS GSSIPITTVD SNILGKVIEY CTKHVEVGNV EGNSEKAEKD LEEFDKRFIA VEMNTLFSLI
101: LAANYLNVKG LLNIGCQKVA DTIKDMKPEE VRSIFNIEND YTPAEEEVVR KENEWAFQP
101: LAANYLNVKG LLNIGCQKVA DTIKDMKPEE VRSIFNIEND YTPAEEEVVR KENEWAFQP
001: MSSNKILLTS SDGESFEIDE AVARKFLIIV HMMEDNCAGE AIPLENVTGD ILSKIIEYAK MHVNEPSEED EDEEAKKNLD SWDAKFMEKL DLETIFKIIL
101: AANYLNFEGL LGFASQTVAD YIKDKTPEEV REIFNIENDF TPEEEEEIRK ENAWTFNE
101: AANYLNFEGL LGFASQTVAD YIKDKTPEEV REIFNIENDF TPEEEEEIRK ENAWTFNE
Arabidopsis Description
ASK18SKP1-like protein 18 [Source:UniProtKB/Swiss-Prot;Acc:Q9SY65]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.