Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- golgi 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra017397.1-P | Field mustard | cytosol | 100.0 | 100.0 |
| CDY17409 | Canola | cytosol | 86.16 | 86.16 |
| CDY03015 | Canola | cytosol | 55.97 | 58.94 |
| CDX68112 | Canola | cytosol | 51.57 | 54.3 |
| CDX85931 | Canola | cytosol | 51.57 | 54.3 |
| CDX93698 | Canola | cytosol | 52.2 | 53.21 |
| CDY40610 | Canola | cytosol | 52.2 | 53.21 |
| CDY40611 | Canola | cytosol | 49.69 | 52.67 |
| CDY39073 | Canola | cytosol | 52.83 | 52.5 |
| CDY13521 | Canola | cytosol | 52.83 | 52.5 |
| CDX73212 | Canola | cytosol | 52.2 | 51.55 |
| CDX87650 | Canola | cytosol | 52.2 | 51.55 |
| CDY44209 | Canola | cytosol | 51.57 | 50.93 |
| CDY69121 | Canola | cytosol | 40.88 | 49.62 |
| CDY29370 | Canola | cytosol | 49.69 | 49.07 |
| CDY16470 | Canola | cytosol | 49.06 | 49.06 |
| CDX89042 | Canola | cytosol | 49.06 | 49.06 |
| CDX77280 | Canola | cytosol | 49.06 | 49.06 |
| CDY14922 | Canola | cytosol | 51.57 | 48.81 |
| CDX80590 | Canola | cytosol | 49.06 | 48.45 |
| CDX93699 | Canola | cytosol | 48.43 | 48.12 |
| CDY63159 | Canola | cytosol | 47.8 | 47.2 |
| CDY67544 | Canola | cytosol | 47.8 | 47.2 |
| CDY01389 | Canola | cytosol | 47.17 | 46.58 |
| CDY43408 | Canola | cytosol | 44.03 | 46.05 |
| CDY68971 | Canola | cytosol | 44.03 | 46.05 |
| CDY45767 | Canola | cytosol | 42.77 | 44.16 |
| CDX96963 | Canola | cytosol | 51.57 | 43.39 |
Protein Annotations
| MapMan:19.2.2.8.1.1 | Gene3D:3.30.710.10 | GO:A0A078EQB0 | EnsemblPlants:CDY04140 | ProteinID:CDY04140 | ProteinID:CDY04140.1 |
| ncoils:Coil | GO:GO:0006511 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 |
| GO:GO:0019538 | EnsemblPlantsGene:GSBRNA2T00117809001 | PFAM:PF01466 | PFAM:PF03931 | PIRSF:PIRSF028729 | PANTHER:PTHR11165 |
| PANTHER:PTHR11165:SF89 | InterPro:SKP1 | InterPro:SKP1-like | InterPro:SKP1-like_dim_sf | InterPro:SKP1/BTB/POZ_sf | SMART:SM00512 |
| SUPFAM:SSF54695 | SUPFAM:SSF81382 | InterPro:Skp1_comp_POZ | InterPro:Skp1_comp_dimer | UniPathway:UPA00143 | UniParc:UPI0002542255 |
Description
BnaA09g19180D
Coordinates
chrLK031949:+:524728..525207
Molecular Weight (calculated)
18043.3 Da
IEP (calculated)
4.225
GRAVY (calculated)
-0.379
Length
159 amino acids
Sequence
(BLAST)
(BLAST)
001: MSESNKKFTL ISSDEEPFEV SEAVAREFEI VAHMLEDGCS GSSIPIKTVN SNILGKVIEY CKKHVEVGNI EGNSEEAKKE LEEFDKNFIA VEMETLFSLI
101: LAANYLNVKG LLDIGCQKVA DTIKDMEPEE VRSIFKIQND YTPAEEEEVR KENIWAFER
101: LAANYLNVKG LLDIGCQKVA DTIKDMEPEE VRSIFKIQND YTPAEEEEVR KENIWAFER
001: MAETKKMIIL KSSDGESFEI EEAVAVKSQT IKHMIEDDCA DNGIPLPNVT GAILAKVIEY CKKHVEAAAE AGGDKDFYGS AENDELKNWD SEFVKVDQPT
101: LFDLILAANY LNIGGLLDLT CKAVADQMRG KTPEQMRAHF NIKNDYTPEE EAEVRNENKW AFE
101: LFDLILAANY LNIGGLLDLT CKAVADQMRG KTPEQMRAHF NIKNDYTPEE EAEVRNENKW AFE
Arabidopsis Description
ASK4SK4 [Source:UniProtKB/TrEMBL;Acc:A0A178W187]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.