CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68112
CDX73212
CDX80590
CDX85931
CDX87650
CDX90932
CDX96963
CDY01389
CDY08688
CDY13521
CDY14922
CDY18013
CDY21896
CDY22060
CDY29370
CDY39073
CDY43408
CDY44209
CDY47299
CDY63159
CDY67544
CDY68971

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G26000.1	CDY01389	AT1G20140.1	12795696
AT3G26000.1	CDY29370	AT1G20140.1	12795696
AT3G26000.1	CDY43408	AT1G20140.1	12795696
AT3G26000.1	CDY44209	AT1G20140.1	12795696
AT3G26000.1	CDY63159	AT1G20140.1	12795696
AT3G26000.1	CDY67544	AT1G20140.1	12795696
AT3G26000.1	CDY68971	AT1G20140.1	12795696
AT3G26000.1	CDX68112	AT1G75950.1	12795696
AT3G26000.1	CDX73212	AT1G75950.1	12795696
AT3G26000.1	CDX80590	AT1G75950.1	12795696
AT3G26000.1	CDX85931	AT1G75950.1	12795696
AT3G26000.1	CDX87650	AT1G75950.1	12795696
AT3G26000.1	CDY13521	AT1G75950.1	12795696
AT3G26000.1	CDY39073	AT1G75950.1	12795696
AT3G26000.1	CDX96963	AT2G03170.1	12795696
AT3G26000.1	CDY14922	AT2G03170.1	12795696
AT3G26000.1	CDY01389	AT2G25700.1	12795696
AT3G26000.1	CDY29370	AT2G25700.1	12795696
AT3G26000.1	CDY43408	AT2G25700.1	12795696
AT3G26000.1	CDY44209	AT2G25700.1	12795696
AT3G26000.1	CDY63159	AT2G25700.1	12795696
AT3G26000.1	CDY67544	AT2G25700.1	12795696
AT3G26000.1	CDY68971	AT2G25700.1	12795696
AT3G26000.1	CDY08688	AT3G44260.1	21798944
AT3G26000.1	CDY47299	AT3G44260.1	21798944
AT3G26000.1	CDX90932	AT4G02570.1	12795696
AT3G26000.1	CDY18013	AT4G02570.1	12795696
AT3G26000.1	CDY21896	AT4G02570.1	12795696
AT3G26000.1	CDY22060	AT4G02570.1	12795696

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY13604	Canola	cytosol	93.47	93.04
Bra025177.1-P	Field mustard	cytosol	92.31	91.88
CDY39176	Canola	cytosol	72.96	79.44
CDY04188	Canola	cytosol	72.03	79.23
CDX99734	Canola	cytosol	68.07	73.37
CDY40985	Canola	cytosol	63.64	69.47
AT3G26000.1	Thale cress	cytosol	64.1	60.71
KRH42623	Soybean	cytosol	50.82	48.34
VIT_01s0010g02380.t01	Wine grape	cytosol	51.98	46.46
KRH58731	Soybean	cytosol	50.12	46.44
PGSC0003DMT400041014	Potato	cytosol, plastid	45.92	41.04
Solyc04g024940.2.1	Tomato	cytosol, plastid	45.45	40.62
PGSC0003DMT400041013	Potato	cytosol, plastid	28.67	37.73
GSMUA_Achr3P02640_001	Banana	cytosol	31.7	33.75
GSMUA_Achr2P20980_001	Banana	cytosol	36.6	33.12
CDY20054	Canola	cytosol	28.21	31.68
CDY00160	Canola	cytosol	27.04	31.35
Os04t0485800-01	Rice	cytosol, extracellular	32.87	31.13
EES12408	Sorghum	cytosol	32.63	30.63
Zm00001d003250_P001	Maize	cytosol	31.7	29.76
CDY17657	Canola	cytosol	18.18	29.32
Zm00001d025717_P001	Maize	cytosol	32.4	28.72
CDY49755	Canola	extracellular	14.92	27.59
CDY17656	Canola	extracellular	14.92	27.59
CDY09428	Canola	cytosol	17.48	25.08
CDY36244	Canola	cytosol	13.05	24.89
TraesCS2B01G363000.1	Wheat	nucleus	30.07	24.62
CDY48808	Canola	cytosol	16.78	24.49
TraesCS2A01G320200.1	Wheat	nucleus	31.0	23.09
TraesCS2D01G343000.1	Wheat	nucleus	31.0	23.01
HORVU2Hr1G083980.2	Barley	nucleus	28.9	20.2

Protein Annotations

EnsemblPlants:CDX83577	EnsemblPlantsGene:GSBRNA2T00139232001	Gene3D:3.80.10.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf	PANTHER:PTHR44838
PANTHER:PTHR44838:SF2	PFAM:PF00646	ProteinID:CDX83577	ProteinID:CDX83577.1	SUPFAM:SSF81383	UniParc:UPI0004EE0A53
MapMan:35.1	:	:	:	:	:

Description

BnaC07g23170D

Coordinates

chrLK031833:-:795697..797780

Molecular Weight (calculated)

47563.2 Da

IEP (calculated)

4.809

GRAVY (calculated)

-0.244

Length

429 amino acids

Sequence
(BLAST)

001: MALNFSQRNF SPHLSEEPMK IANGYLVEGV SDRKDDVFSH PWCSSLAKGD SAASSVDILD VLPSDPFGMD INNTFTAITG WLQDLEVDYG RDESGIGDGN
101: HHHQLFAGLS FIWNNAMRFH EFPESSNVWG SLNGFGDGSC HGSFVSPGSV DQVLDVRNGG EVAESSGCCT NDGGENANVV HPGFGFSLYH LGVKDLLSVS
201: MVCKSLHTTV CDDSLLWKHI HISQPLNEKI TDEALLQLTD RAQGTMQCLR LVDCSRITED CLKQVLERNR QVVKLGVPGC IRITIDGVLS ILRDLKSAGK
301: LQVKHLEIGG LFGVTKDHYE ELFGLLNIET NVERSIQKPR FYHRGYSCLS CDDNKGIDIE MCPKCENSRL VYDCPAEYCK GKEECRACSL CIQRCFQCGR
401: CINDSEYEET FCLEFLCADC SRPSPELPL

Best Arabidopsis Sequence Match ( AT3G26000.1 )
(BLAST)

001: MALNFSHRPF SSHLSEEPMM IANGNWCSSF DNGRKNTGGD ASSVDILDVL PSDPFGMDIN NTFTAITGWL EDLEDDYNNQ YGRRRRDDIW IGDGNRQQLF
101: AGLSFFWNNA MQFQSSGYSY GSESLFGGAF DGSLFSTCKF PESSGENNGF GGALDGDGSC HGAFISASSV DEVLSHENAR NGEVVGSSDR CNNGEEDAYV
201: HPAIGFCLYH LRGKDLLSVS MVCKSLHTTV CDDTLLWKHI HICRPLNEKI TEEALLHLTE RAQGTMQCLR IVDCCRITDD CLKRVVARNR QVVKIGVPGC
301: TRITIDGILS VLRDLKSAGK LQVKHLQLRG LFGVTKDHYD ELIDLLNIDN KVKQTIQKPR FYHRGEACVS CDDDRALDIE MCPKCQNFKL VYDCPAEDCK
401: GKKKGSEECR ACSLCIQRCY HCGRCIIDTE YEEMFCLELL CAVCSKPTPK LTL

Arabidopsis Description

SKIP14F-box protein SKIP14 [Source:UniProtKB/Swiss-Prot;Acc:Q9LU91]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.