Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G343000.1 | Wheat | nucleus | 90.28 | 89.97 |
| TraesCS2B01G363000.1 | Wheat | nucleus | 76.22 | 83.78 |
| HORVU2Hr1G083980.2 | Barley | nucleus | 76.39 | 71.66 |
| Os04t0485800-01 | Rice | cytosol, extracellular | 44.44 | 56.51 |
| EES12408 | Sorghum | cytosol | 37.85 | 47.7 |
| Zm00001d003250_P001 | Maize | cytosol | 36.98 | 46.61 |
| Zm00001d025717_P001 | Maize | cytosol | 35.59 | 42.36 |
| CDY04188 | Canola | cytosol | 22.74 | 33.59 |
| Bra017339.1-P | Field mustard | cytosol | 22.74 | 33.59 |
| GSMUA_Achr3P02640_001 | Banana | cytosol | 23.26 | 33.25 |
| Bra036353.1-P | Field mustard | cytosol | 22.4 | 32.82 |
| CDY39176 | Canola | cytosol | 22.4 | 32.74 |
| CDX99734 | Canola | cytosol | 22.57 | 32.66 |
| CDY40985 | Canola | cytosol | 22.22 | 32.57 |
| GSMUA_Achr2P20980_001 | Banana | cytosol | 25.52 | 31.01 |
| CDX83577 | Canola | cytosol | 23.09 | 31.0 |
| AT3G26000.1 | Thale cress | cytosol | 23.78 | 30.24 |
| KRH42623 | Soybean | cytosol | 23.61 | 30.16 |
| CDY13604 | Canola | cytosol | 22.4 | 29.93 |
| KRH58731 | Soybean | cytosol | 23.78 | 29.59 |
| Bra025177.1-P | Field mustard | cytosol | 22.05 | 29.47 |
| VIT_01s0010g02380.t01 | Wine grape | cytosol | 24.31 | 29.17 |
| PGSC0003DMT400041014 | Potato | cytosol, plastid | 23.61 | 28.33 |
| Solyc04g024940.2.1 | Tomato | cytosol, plastid | 23.61 | 28.33 |
| PGSC0003DMT400041013 | Potato | cytosol, plastid | 14.41 | 25.46 |
| TraesCS2A01G438500.1 | Wheat | cytosol, plasma membrane, plastid | 13.72 | 24.84 |
Protein Annotations
| EnsemblPlants:TraesCS2A01G320200.1 | EnsemblPlantsGene:TraesCS2A01G320200 | Gene3D:3.80.10.10 | InterPro:IPR032675 | InterPro:LRR_dom_sf | PANTHER:PTHR44838 |
| PANTHER:PTHR44838:SF1 | SEG:seg | SUPFAM:SSF52047 | MapMan:35.1 | : | : |
Description
No Description!
Coordinates
chr2A:+:549677724..549680177
Molecular Weight (calculated)
61649.7 Da
IEP (calculated)
5.708
GRAVY (calculated)
-0.082
Length
576 amino acids
Sequence
(BLAST)
(BLAST)
001: MCILHRKKHQ KKEGVRRSWR SRRRRIGAQG SLEVIMALNY PSCSFLVSDE CSALMRGCGC WSEEASPLSS PGVNSRRWDD FEPDPADLLP VDPFGMNLGN
101: TITAAIASCL DRTVMSGAGR FGSSDGGAAD LSFYLNHAIA VSRGPSCLPG GFGRAFEGPF VFGGLYEAGG ANCSQGLPPL VSCSGSIVPG EDPSTSGSAA
201: LLCREGVDAV GASCSRPIVP GEDPSTSGSA ALLCREGVDA VAASCSRPIV PGEDPSTSGS AALVCCDGVD AVGASCSRPI VPGEDPSTSG SAALVCCDGV
301: DDVGSAPHDG MMYALAYLGL RDILATEMVC KSLHSWIRSE LSWKCIHIEP VLSGKISDPD LLFLTQKIPG ALQCLNINDC INITDNGLNA VLQSNPTLTK
401: LSIARCPRLT LDGLIANLKS FNMKAVSGIK SLRIDKNFNL PKEDYEELLS LLSIDKRQEL HNWAPRFRHS NHFLLDCNDG YALDIEMCPI CQSYKLVFDC
501: PEVECSDKRS GKCRACEVCI KRCRQCGRCL ERNEKFEEKF DLVYLCYKCR GDPASPSLGV EKDLVSILSS GRIASP
101: TITAAIASCL DRTVMSGAGR FGSSDGGAAD LSFYLNHAIA VSRGPSCLPG GFGRAFEGPF VFGGLYEAGG ANCSQGLPPL VSCSGSIVPG EDPSTSGSAA
201: LLCREGVDAV GASCSRPIVP GEDPSTSGSA ALLCREGVDA VAASCSRPIV PGEDPSTSGS AALVCCDGVD AVGASCSRPI VPGEDPSTSG SAALVCCDGV
301: DDVGSAPHDG MMYALAYLGL RDILATEMVC KSLHSWIRSE LSWKCIHIEP VLSGKISDPD LLFLTQKIPG ALQCLNINDC INITDNGLNA VLQSNPTLTK
401: LSIARCPRLT LDGLIANLKS FNMKAVSGIK SLRIDKNFNL PKEDYEELLS LLSIDKRQEL HNWAPRFRHS NHFLLDCNDG YALDIEMCPI CQSYKLVFDC
501: PEVECSDKRS GKCRACEVCI KRCRQCGRCL ERNEKFEEKF DLVYLCYKCR GDPASPSLGV EKDLVSILSS GRIASP
001: MALNFSHRPF SSHLSEEPMM IANGNWCSSF DNGRKNTGGD ASSVDILDVL PSDPFGMDIN NTFTAITGWL EDLEDDYNNQ YGRRRRDDIW IGDGNRQQLF
101: AGLSFFWNNA MQFQSSGYSY GSESLFGGAF DGSLFSTCKF PESSGENNGF GGALDGDGSC HGAFISASSV DEVLSHENAR NGEVVGSSDR CNNGEEDAYV
201: HPAIGFCLYH LRGKDLLSVS MVCKSLHTTV CDDTLLWKHI HICRPLNEKI TEEALLHLTE RAQGTMQCLR IVDCCRITDD CLKRVVARNR QVVKIGVPGC
301: TRITIDGILS VLRDLKSAGK LQVKHLQLRG LFGVTKDHYD ELIDLLNIDN KVKQTIQKPR FYHRGEACVS CDDDRALDIE MCPKCQNFKL VYDCPAEDCK
401: GKKKGSEECR ACSLCIQRCY HCGRCIIDTE YEEMFCLELL CAVCSKPTPK LTL
101: AGLSFFWNNA MQFQSSGYSY GSESLFGGAF DGSLFSTCKF PESSGENNGF GGALDGDGSC HGAFISASSV DEVLSHENAR NGEVVGSSDR CNNGEEDAYV
201: HPAIGFCLYH LRGKDLLSVS MVCKSLHTTV CDDTLLWKHI HICRPLNEKI TEEALLHLTE RAQGTMQCLR IVDCCRITDD CLKRVVARNR QVVKIGVPGC
301: TRITIDGILS VLRDLKSAGK LQVKHLQLRG LFGVTKDHYD ELIDLLNIDN KVKQTIQKPR FYHRGEACVS CDDDRALDIE MCPKCQNFKL VYDCPAEDCK
401: GKKKGSEECR ACSLCIQRCY HCGRCIIDTE YEEMFCLELL CAVCSKPTPK LTL
Arabidopsis Description
SKIP14F-box protein SKIP14 [Source:UniProtKB/Swiss-Prot;Acc:Q9LU91]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.