Factsheet for TraesCS2A01G438500.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid, cytosol

Predictor Summary:

plastid 2
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plasma membrane, plastid
Any Predictor:	cytosol, plasma membrane, plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G457400.1
TraesCS3B01G497300.1
TraesCS3D01G450200.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G01620.1	TraesCS3A01G457400.1	AT4G02570.1	12795696
AT2G01620.1	TraesCS3B01G497300.1	AT4G02570.1	12795696
AT2G01620.1	TraesCS3D01G450200.1	AT4G02570.1	12795696

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G435900.1	Wheat	cytosol, mitochondrion, peroxisome	95.28	91.27
HORVU2Hr1G101900.5	Barley	plasma membrane, plastid	91.19	88.15
Zm00001d050359_P001	Maize	plastid	64.47	64.06
EES13867	Sorghum	plastid	62.26	60.92
Os08t0428100-00	Rice	mitochondrion	43.71	48.1
VIT_01s0011g05490.t01	Wine grape	cytosol	38.99	37.58
KRH60371	Soybean	cytosol, plasma membrane, plastid	37.11	37.34
KRH41674	Soybean	cytosol, plasma membrane, plastid	33.33	37.32
Solyc01g005450.2.1	Tomato	extracellular	33.65	34.85
PGSC0003DMT400081916	Potato	cytosol, plasma membrane	33.02	34.54
GSMUA_Achr5P05920_001	Banana	cytosol, golgi	33.33	34.42
Bra026645.1-P	Field mustard	cytosol	30.5	32.44
AT2G01620.1	Thale cress	cytosol	29.56	32.19
Bra024867.1-P	Field mustard	extracellular	23.27	32.03
CDY48808	Canola	cytosol	29.56	31.97
Bra024868.1-P	Field mustard	cytosol	28.93	31.94
CDY49755	Canola	extracellular	22.96	31.47
CDY17656	Canola	extracellular	22.96	31.47
CDY09428	Canola	cytosol	29.56	31.44
CDY17657	Canola	cytosol	25.79	30.83
CDY36244	Canola	cytosol	21.7	30.67
TraesCS2A01G320200.1	Wheat	nucleus	24.84	13.72

Protein Annotations

EnsemblPlants:TraesCS2A01G438500.1	EnsemblPlantsGene:TraesCS2A01G438500	Gene3D:3.80.10.10	InterPro:4Fe4S_Fe_S_CS	InterPro:IPR032675	InterPro:LRR_dom_sf
PANTHER:PTHR45375	ScanProsite:PS00198	SEG:seg	SUPFAM:SSF52047	MapMan:35.1	:

Description

No Description!

Coordinates

chr2A:+:689753887..689759262

Molecular Weight (calculated)

35326.8 Da

IEP (calculated)

6.632

GRAVY (calculated)

-0.135

Length

318 amino acids

Sequence
(BLAST)

001: MLPTTATAST PPPPPAPPPG EPHAALFLAL GYMRLPELLA CWRVCRLLGE AVAGDPLLWR RLAVEPPLSG RVTDQVLLKL TARAEGTLRS LRLFGCLHVS
101: DTGLLRVVEH NPCVTEIYVP GCTGLTGDGV VNIVQLLHEH KGNISRLRLD GISRMSKHHL DIIMSLMCKG NPQGQQDGIP LFYNHRAREA LNTNDERPID
201: VDVCSVCANV RLVFDCTRDD CRKVRDSLWR CRGCYFCFPR CEKCGGCISP EDLVEADLAC SDLMCLDCWL TVPKCSTCNR PYCERHENLM VSLSMAGQFS
301: CQRCKELGSS HESQEDDY

Best Arabidopsis Sequence Match ( AT2G01620.1 )
(BLAST)

001: MKTELEEEEE EEWRSVHEVL LIVLPYLHSL FELLSMIRVS RSLRDAIRDE TALWTKLVIE PPLSSRLTDD ILSEFSSKSA GKLKTLILRQ CLMVTNKGLR
101: RVVDANPLIT KIIVPGCSGL TPEGIMECVE SLSKNNHKLE TLHINGVNGF TKQHLSALYT YLSSEGTIDL EVCPKCDEVR MIPSCSRESC NQKQRKCRGC
201: WLCIPRCAEC AVCLVGSDTE SQEAACGNDD VLCLECWLVL PKCRFCNKPY CTNHSSRRHE IAITDAASRP SFECEACYYR AGTNPYEVDY QI

Arabidopsis Description

SKIP28F-box protein SKIP28 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZU90]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.