Factsheet for GSMUA_Achr5P05920_001

Subcellular Localization

min:

: max

Winner_takes_all: golgi, cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, golgi
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	golgi

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr9P17620_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G01620.1	GSMUA_Achr9P17620_001	AT4G02570.1	12795696

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os08t0428100-00	Rice	mitochondrion	33.77	35.99
TraesCS2B01G458800.1	Wheat	cytosol, plasma membrane, plastid	34.74	33.65
EES13867	Sorghum	plastid	35.39	33.54
HORVU2Hr1G101900.5	Barley	plasma membrane, plastid	35.71	33.43
TraesCS2A01G438500.1	Wheat	cytosol, plasma membrane, plastid	34.42	33.33
TraesCS2D01G435600.1	Wheat	cytosol	34.74	32.23
TraesCS2D01G435900.1	Wheat	cytosol, mitochondrion, peroxisome	34.42	31.93
Zm00001d050359_P001	Maize	plastid	32.79	31.56
CDY17657	Canola	cytosol	26.95	31.2
VIT_01s0011g05490.t01	Wine grape	cytosol	32.47	30.3
CDY17656	Canola	extracellular	22.4	29.74
CDY49755	Canola	extracellular	22.4	29.74
CDY48808	Canola	cytosol	28.25	29.59
Bra024867.1-P	Field mustard	extracellular	22.08	29.44
Bra026645.1-P	Field mustard	cytosol	28.57	29.43
KRH60371	Soybean	cytosol, plasma membrane, plastid	30.19	29.43
KRH41674	Soybean	cytosol, plasma membrane, plastid	26.3	28.52
Bra024868.1-P	Field mustard	cytosol	26.62	28.47
PGSC0003DMT400081916	Potato	cytosol, plasma membrane	27.92	28.29
CDY09428	Canola	cytosol	27.27	28.09
AT2G01620.1	Thale cress	cytosol	26.62	28.08
Solyc01g005450.2.1	Tomato	extracellular	26.62	26.71
CDY36244	Canola	cytosol	18.51	25.33
GSMUA_Achr3P02640_001	Banana	cytosol	25.32	19.35
GSMUA_Achr2P20980_001	Banana	cytosol	27.27	17.72

Protein Annotations

EnsemblPlants:GSMUA_Achr5P05920_001	EnsemblPlants:GSMUA_Achr5T05920_001	EnsemblPlantsGene:GSMUA_Achr5G05920_001	Gene3D:3.80.10.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf
PANTHER:PTHR45375	PFAM:PF00646	SEG:seg	SUPFAM:SSF52047	SUPFAM:SSF81383	UniParc:UPI000296B6A0
UniProt:M0SW21	MapMan:35.1	:	:	:	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr5G05920_001]

Coordinates

chr5:-:4413429..4415994

Molecular Weight (calculated)

34754.2 Da

IEP (calculated)

7.804

GRAVY (calculated)

-0.004

Length

308 amino acids

Sequence
(BLAST)

001: MIKSKYETGT RRFFVPPLSF FASEALLRME PSPLLAEDAV VGRPPPPSHD GCRNPDAGFS DGTGALLLVL GYLRLPELLA FQRVSRFFRD AVAGDGLLWR
101: RVAVQSPLSG RLTDDALLRI TSRAEGKLES LALMDCWKIT DDGLMQVVDR NPGIAKLHVP GCTYLTANGI VRIVQWLYEH KGNLKSLQIH GICNITKDHL
201: DILKLLLLGS NHQQVLPPTN DRYWHSFTFI NHDDRPIDVD ICPKCKHVRM VFDCTRENCR LVSSGYHIIL IFFLSNIWSE ISNDVVRDLL SILFSSIFSL
301: VNYHPSQT

Best Arabidopsis Sequence Match ( AT2G01620.1 )
(BLAST)

001: MKTELEEEEE EEWRSVHEVL LIVLPYLHSL FELLSMIRVS RSLRDAIRDE TALWTKLVIE PPLSSRLTDD ILSEFSSKSA GKLKTLILRQ CLMVTNKGLR
101: RVVDANPLIT KIIVPGCSGL TPEGIMECVE SLSKNNHKLE TLHINGVNGF TKQHLSALYT YLSSEGTIDL EVCPKCDEVR MIPSCSRESC NQKQRKCRGC
201: WLCIPRCAEC AVCLVGSDTE SQEAACGNDD VLCLECWLVL PKCRFCNKPY CTNHSSRRHE IAITDAASRP SFECEACYYR AGTNPYEVDY QI

Arabidopsis Description

SKIP28F-box protein SKIP28 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZU90]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.