CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, plasma membrane, plastid

Predictor Summary:

nucleus 1
cytosol 1
mitochondrion 1
plastid 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plasma membrane, plastid
Any Predictor:	cytosol, mitochondrion, plasma membrane, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG96405
KRH68142

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G01620.1	KRG96405	AT4G02570.1	12795696
AT2G01620.1	KRH68142	AT4G02570.1	12795696

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH60371	Soybean	cytosol, plasma membrane, plastid	88.38	79.43
PGSC0003DMT400081916	Potato	cytosol, plasma membrane	44.01	41.12
Solyc01g005450.2.1	Tomato	extracellular	42.96	39.74
VIT_01s0011g05490.t01	Wine grape	cytosol	46.13	39.7
Bra024867.1-P	Field mustard	extracellular	28.17	34.63
AT2G01620.1	Thale cress	cytosol	35.56	34.59
CDY17656	Canola	extracellular	28.17	34.48
CDY49755	Canola	extracellular	28.17	34.48
CDY09428	Canola	cytosol	35.92	34.11
Bra026645.1-P	Field mustard	cytosol	35.56	33.78
CDY48808	Canola	cytosol	34.86	33.67
TraesCS2B01G458800.1	Wheat	cytosol, plasma membrane, plastid	37.68	33.65
CDY17657	Canola	cytosol	31.34	33.46
CDY36244	Canola	cytosol	26.41	33.33
TraesCS2A01G438500.1	Wheat	cytosol, plasma membrane, plastid	37.32	33.33
Bra024868.1-P	Field mustard	cytosol	33.8	33.33
HORVU2Hr1G101900.5	Barley	plasma membrane, plastid	38.03	32.83
TraesCS2D01G435600.1	Wheat	cytosol	37.68	32.23
TraesCS2D01G435900.1	Wheat	cytosol, mitochondrion, peroxisome	37.32	31.93
EES13867	Sorghum	plastid	33.8	29.54
Zm00001d050359_P001	Maize	plastid	32.39	28.75
GSMUA_Achr5P05920_001	Banana	cytosol, golgi	28.52	26.3
Os08t0428100-00	Rice	mitochondrion	24.65	24.22
KRH42623	Soybean	cytosol	30.28	19.07
KRH58731	Soybean	cytosol	30.99	19.01
KRG94336	Soybean	cytosol	30.63	17.76
KRH57627	Soybean	cytosol	30.63	17.58

Protein Annotations

Gene3D:3.80.10.10	MapMan:35.1	InterPro:4Fe4S_Fe_S_CS	UniProt:A0A0R0IGV7	EMBL:ACUP02004777	InterPro:F-box-like_dom_sf
InterPro:F-box_dom	EnsemblPlantsGene:GLYMA_08G043200	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810
InterPro:IPR032675	EnsemblPlants:KRH41674	ProteinID:KRH41674	ProteinID:KRH41674.1	InterPro:LRR_dom_sf	PFAM:PF00646
ScanProsite:PS00198	PFscan:PS50181	PANTHER:PTHR45375	SUPFAM:SSF81383	UniParc:UPI0006EDCFDC	SEG:seg

Description

hypothetical protein

Coordinates

chr8:-:3413171..3414426

Molecular Weight (calculated)

32475.1 Da

IEP (calculated)

5.085

GRAVY (calculated)

-0.255

Length

284 amino acids

Sequence
(BLAST)

001: MEESSKSKAV EVEQEASEAK APHEAMFLVL AYLPVYEVVV MSQVCTSLRD AVNNDILPWL NVFVQRPLSW RLNDDILIKI TSKANGSLKT LALINCMHVT
101: DEGLQRVVQQ NPLINKTLSI NGIYNIQKEH LDMLIVNLGK NQPLEEQQEP VYYHKRCNFS VFKQEESRRL IDLEICPRCF EVRMVYDCPK GHCTRREWPL
201: APCRGCNFCI PKCENCGGCI ESGEVEEGDC EDIFCLECWL QIPKCSFCNK PYCKQHINCT SSDSSLICKV CDENSHGYTY TDVL

Best Arabidopsis Sequence Match ( AT2G01620.1 )
(BLAST)

001: MKTELEEEEE EEWRSVHEVL LIVLPYLHSL FELLSMIRVS RSLRDAIRDE TALWTKLVIE PPLSSRLTDD ILSEFSSKSA GKLKTLILRQ CLMVTNKGLR
101: RVVDANPLIT KIIVPGCSGL TPEGIMECVE SLSKNNHKLE TLHINGVNGF TKQHLSALYT YLSSEGTIDL EVCPKCDEVR MIPSCSRESC NQKQRKCRGC
201: WLCIPRCAEC AVCLVGSDTE SQEAACGNDD VLCLECWLVL PKCRFCNKPY CTNHSSRRHE IAITDAASRP SFECEACYYR AGTNPYEVDY QI

Arabidopsis Description

SKIP28F-box protein SKIP28 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZU90]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.