Factsheet for HORVU2Hr1G101900.5

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid

Predictor Summary:

plastid 1
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane, plastid
Any Predictor:	mitochondrion, plasma membrane, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU3Hr1G098530.4

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G01620.1	HORVU3Hr1G098530.4	AT4G02570.1	12795696

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G458800.1	Wheat	cytosol, plasma membrane, plastid	88.45	91.51
TraesCS2A01G438500.1	Wheat	cytosol, plasma membrane, plastid	88.15	91.19
TraesCS2D01G435900.1	Wheat	cytosol, mitochondrion, peroxisome	89.36	88.55
TraesCS2D01G435600.1	Wheat	cytosol	87.54	86.75
Zm00001d050359_P001	Maize	plastid	61.4	63.12
EES13867	Sorghum	plastid	60.79	61.54
Os08t0428100-00	Rice	mitochondrion	43.16	49.13
KRH60371	Soybean	cytosol, plasma membrane, plastid	37.08	38.61
KRH41674	Soybean	cytosol, plasma membrane, plastid	32.83	38.03
VIT_01s0011g05490.t01	Wine grape	cytosol	37.08	36.97
GSMUA_Achr5P05920_001	Banana	cytosol, golgi	33.43	35.71
PGSC0003DMT400081916	Potato	cytosol, plasma membrane	31.91	34.54
Solyc01g005450.2.1	Tomato	extracellular	31.91	34.2
Bra024867.1-P	Field mustard	extracellular	23.1	32.9
Bra026645.1-P	Field mustard	cytosol	29.79	32.78
CDY49755	Canola	extracellular	22.8	32.33
CDY17656	Canola	extracellular	22.8	32.33
CDY48808	Canola	cytosol	28.88	32.31
Bra024868.1-P	Field mustard	cytosol	28.27	32.29
AT2G01620.1	Thale cress	cytosol	28.27	31.85
CDY09428	Canola	cytosol	28.88	31.77
CDY36244	Canola	cytosol	21.58	31.56
CDY17657	Canola	cytosol	24.92	30.83
HORVU2Hr1G083980.2	Barley	nucleus	23.4	12.54

Protein Annotations

EnsemblPlants:HORVU2Hr1G101900.5	EnsemblPlantsGene:HORVU2Hr1G101900	Gene3D:3.80.10.10	InterPro:4Fe4S_Fe_S_CS	InterPro:IPR032675	InterPro:LRR_dom_sf
PANTHER:PTHR45375	ScanProsite:PS00198	SEG:seg	SUPFAM:SSF52047	MapMan:35.1	:

Description

No Description!

Coordinates

chrchr2H:-:695090151..695204876

Molecular Weight (calculated)

35784.3 Da

IEP (calculated)

6.663

GRAVY (calculated)

-0.149

Length

329 amino acids

Sequence
(BLAST)

001: XXXXXVTTGR TMLPTTATAS TPPPPPAPPP GEPHAALFFA LGYMRLPELL ACLRVCRLLG EAVAGDPLLW RRVAVEPPLS GRVTDDVLLK LTARAEGTLR
101: SLRLSGCVHV SDAGLLRVVE RNPSVTEIYV PACTGLTGDG VVKIVQLLHE QKGNISRLRL DGISRMSKHH LDIIMSLICK GNPQGQQDGI PLFYNHRARE
201: ALNSNDERPI DVDVCPVCAN VRLVFDCTRD DCRKVRDSLW RCRGCYFCFP RCEKCGGCIS SEDLDEADLA CSDLMCLDCW LTVPKCSTCN RPYCERHENL
301: MVTLSVPGQF SCQRCKELGA SHESQEEDY

Best Arabidopsis Sequence Match ( AT2G01620.1 )
(BLAST)

001: MKTELEEEEE EEWRSVHEVL LIVLPYLHSL FELLSMIRVS RSLRDAIRDE TALWTKLVIE PPLSSRLTDD ILSEFSSKSA GKLKTLILRQ CLMVTNKGLR
101: RVVDANPLIT KIIVPGCSGL TPEGIMECVE SLSKNNHKLE TLHINGVNGF TKQHLSALYT YLSSEGTIDL EVCPKCDEVR MIPSCSRESC NQKQRKCRGC
201: WLCIPRCAEC AVCLVGSDTE SQEAACGNDD VLCLECWLVL PKCRFCNKPY CTNHSSRRHE IAITDAASRP SFECEACYYR AGTNPYEVDY QI

Arabidopsis Description

SKIP28F-box protein SKIP28 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZU90]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.