Factsheet for HORVU2Hr1G083980.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 4
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU2Hr1G123480.1
HORVU3Hr1G098530.4

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G26000.1	HORVU2Hr1G123480.1	AT3G44260.1	21798944
AT3G26000.1	HORVU3Hr1G098530.4	AT4G02570.1	12795696

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G320200.1	Wheat	nucleus	71.66	76.39
TraesCS2B01G363000.1	Wheat	nucleus	65.15	76.34
TraesCS2D01G343000.1	Wheat	nucleus	68.73	73.01
Os04t0485800-01	Rice	cytosol, extracellular	39.09	52.98
EES12408	Sorghum	cytosol	32.41	43.54
Zm00001d003250_P001	Maize	cytosol	31.43	42.23
Zm00001d025717_P001	Maize	cytosol	30.46	38.64
GSMUA_Achr3P02640_001	Banana	cytosol	21.82	33.25
CDY04188	Canola	cytosol	19.71	31.03
CDY40985	Canola	cytosol	19.71	30.79
Bra017339.1-P	Field mustard	cytosol	19.54	30.77
Bra036353.1-P	Field mustard	cytosol	19.54	30.53
CDX99734	Canola	cytosol	19.71	30.4
CDY39176	Canola	cytosol	19.22	29.95
GSMUA_Achr2P20980_001	Banana	cytosol	22.48	29.11
CDX83577	Canola	cytosol	20.2	28.9
AT3G26000.1	Thale cress	cytosol	20.85	28.26
KRH42623	Soybean	cytosol	20.68	28.16
CDY13604	Canola	cytosol	19.54	27.84
KRH58731	Soybean	cytosol	20.85	27.65
Bra025177.1-P	Field mustard	cytosol	19.22	27.38
PGSC0003DMT400041014	Potato	cytosol, plastid	21.17	27.08
Solyc04g024940.2.1	Tomato	cytosol, plastid	21.17	27.08
VIT_01s0010g02380.t01	Wine grape	cytosol	21.01	26.88
HORVU2Hr1G101900.5	Barley	plasma membrane, plastid	12.54	23.4
PGSC0003DMT400041013	Potato	cytosol, plastid	12.38	23.31

Protein Annotations

EnsemblPlants:HORVU2Hr1G083980.2	EnsemblPlantsGene:HORVU2Hr1G083980	Gene3D:3.80.10.10	InterPro:IPR032675	InterPro:LRR_dom_sf	PANTHER:PTHR44838
PANTHER:PTHR44838:SF1	SEG:seg	SUPFAM:SSF52047	UniParc:UPI0002965F3C	UniProt:M0XVH0	MapMan:35.1

Description

No Description!

Coordinates

chrchr2H:-:609149955..609153831

Molecular Weight (calculated)

66399.0 Da

IEP (calculated)

6.104

GRAVY (calculated)

-0.303

Length

614 amino acids

Sequence
(BLAST)

001: MCIFHRKNTK KKKKRARRWW RRRRVHWNLE LMALNYPSCS FLVSDECSAL MRGCGCWSEE ASPLSSPGVN SRRRDDFERD PADLLPVDPF GMNLGHTLTA
101: ALASCLDRTV MSGPGRFGSS DGGRSVRPAD LSFYMDLEHA MALSREPSYL PAGCSRAFEG PSGFGGLYDA RGANCSQGLP ALASCSRSVV PTEDQSTSGN
201: AALGCPDDGD DVVGSVPHDE MMYAPSGFGG LYDAGGGANC SQGLPPLASC SRSIVPGDDP STSGNAALGC PDDGDDDVGS APHDEMKYAP SGFGGLCDAG
301: GANCSQGLPP LASCSCPIVP GEDPSTPGNA ALVCRDGDDA VGSAPHDGMT YALRYLGLRE ILATEMVCKS LHAAIRSVCF VNCLHIEPVL SGKISDPDLL
401: RLTQKIPEGF ECLNINDCIN ITDNGLNVVL QSNLKLTKLS IARCPRLTLD GLIANLKSFN MKAVSGIKSL RIDKNFNLPK EDYEELLSLL RIDKRQELHN
501: RAPRFRHSNH LLLDCNDGYA LDIEMCPICR SYKLVFDCPE VGCNDERSGK CRACEVCIKR CRQCGRCLER NEKFEEKFDL VYLCYKCRGD PASPSLSVEK
601: DLVSTLSSGR IPSP

Best Arabidopsis Sequence Match ( AT3G26000.1 )
(BLAST)

001: MALNFSHRPF SSHLSEEPMM IANGNWCSSF DNGRKNTGGD ASSVDILDVL PSDPFGMDIN NTFTAITGWL EDLEDDYNNQ YGRRRRDDIW IGDGNRQQLF
101: AGLSFFWNNA MQFQSSGYSY GSESLFGGAF DGSLFSTCKF PESSGENNGF GGALDGDGSC HGAFISASSV DEVLSHENAR NGEVVGSSDR CNNGEEDAYV
201: HPAIGFCLYH LRGKDLLSVS MVCKSLHTTV CDDTLLWKHI HICRPLNEKI TEEALLHLTE RAQGTMQCLR IVDCCRITDD CLKRVVARNR QVVKIGVPGC
301: TRITIDGILS VLRDLKSAGK LQVKHLQLRG LFGVTKDHYD ELIDLLNIDN KVKQTIQKPR FYHRGEACVS CDDDRALDIE MCPKCQNFKL VYDCPAEDCK
401: GKKKGSEECR ACSLCIQRCY HCGRCIIDTE YEEMFCLELL CAVCSKPTPK LTL

Arabidopsis Description

SKIP14F-box protein SKIP14 [Source:UniProtKB/Swiss-Prot;Acc:Q9LU91]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.