Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 2
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G343000.1 | Wheat | nucleus | 86.83 | 78.72 |
| TraesCS2A01G320200.1 | Wheat | nucleus | 83.78 | 76.22 |
| HORVU2Hr1G083980.2 | Barley | nucleus | 76.34 | 65.15 |
| Os04t0485800-01 | Rice | cytosol, extracellular | 49.05 | 56.73 |
| EES12408 | Sorghum | cytosol | 41.6 | 47.7 |
| Zm00001d003250_P001 | Maize | cytosol | 40.65 | 46.61 |
| Zm00001d025717_P001 | Maize | cytosol | 39.12 | 42.36 |
| GSMUA_Achr3P02640_001 | Banana | cytosol | 26.53 | 34.49 |
| CDY04188 | Canola | cytosol | 24.43 | 32.82 |
| CDY40985 | Canola | cytosol | 24.43 | 32.57 |
| Bra036353.1-P | Field mustard | cytosol | 24.43 | 32.57 |
| Bra017339.1-P | Field mustard | cytosol | 24.24 | 32.56 |
| CDY39176 | Canola | cytosol | 23.86 | 31.73 |
| CDX99734 | Canola | cytosol | 24.05 | 31.66 |
| GSMUA_Achr2P20980_001 | Banana | cytosol | 28.05 | 31.01 |
| KRH42623 | Soybean | cytosol | 26.34 | 30.6 |
| CDX83577 | Canola | cytosol | 24.62 | 30.07 |
| KRH58731 | Soybean | cytosol | 26.34 | 29.81 |
| AT3G26000.1 | Thale cress | cytosol | 25.38 | 29.36 |
| VIT_01s0010g02380.t01 | Wine grape | cytosol | 26.72 | 29.17 |
| CDY13604 | Canola | cytosol | 23.66 | 28.77 |
| Bra025177.1-P | Field mustard | cytosol | 23.47 | 28.54 |
| Solyc04g024940.2.1 | Tomato | cytosol, plastid | 25.19 | 27.5 |
| PGSC0003DMT400041014 | Potato | cytosol, plastid | 24.81 | 27.08 |
| TraesCS2B01G458800.1 | Wheat | cytosol, plasma membrane, plastid | 15.84 | 26.1 |
| PGSC0003DMT400041013 | Potato | cytosol, plastid | 15.08 | 24.23 |
Protein Annotations
| EnsemblPlants:TraesCS2B01G363000.1 | EnsemblPlantsGene:TraesCS2B01G363000 | Gene3D:3.80.10.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:F-box-like_dom_sf | InterPro:IPR032675 | InterPro:LRR_dom_sf | PANTHER:PTHR44838 | PANTHER:PTHR44838:SF1 | SEG:seg |
| SUPFAM:SSF52047 | SUPFAM:SSF81383 | MapMan:35.1 | : | : | : |
Description
No Description!
Coordinates
chr2B:-:517381583..517384916
Molecular Weight (calculated)
57343.9 Da
IEP (calculated)
7.810
GRAVY (calculated)
-0.222
Length
524 amino acids
Sequence
(BLAST)
(BLAST)
001: MCILHRKKHQ KKEGGRRRRR RNWSRRRRIG AQGSLEVIMA LNYPSCSFLV SDECSALMRG CGCWSEEASP LSSPGVNSRR WDDFEPDPAD LLPADPFGMN
101: LGNTITAAIA SCLDRTVMSG AGRFVGSSDG GAAVRADLSY YLDLNHAIAL SWEPPFLPGG CRRAFEGPFG FGGLYAAGGA NCSQGLPPLA SCSRQIVPGE
201: DPSTSGSAAL VCRDGVDAVG ASCSWPIVPG EDPSPSGSAA LVCRDGVDTV GSAPHDGMKY ALAYLGLRDI LATEMVCKSL HSWIRTHSLV WKCIHVEPVL
301: SGKITDPDLL RLTQKIPGDL QCLNINDCIN ITDNGLNAVL QSNLRLTKLS IARCPRLTLD GLIANLKSFN MKAVSGIKCL RIDKNFNLPK EDYEELLSLL
401: SIDKRQELHN RAPRFRHSNH FLLDCNDGYA LDIEMCPICQ SYKLVFDCPE AECSDKRSGK CRACEVCIKR CRQCGRCLER NEKFEEKFDL VYLCYKCRGD
501: PASPSLGVEK DLVSILSSGR IPSP
101: LGNTITAAIA SCLDRTVMSG AGRFVGSSDG GAAVRADLSY YLDLNHAIAL SWEPPFLPGG CRRAFEGPFG FGGLYAAGGA NCSQGLPPLA SCSRQIVPGE
201: DPSTSGSAAL VCRDGVDAVG ASCSWPIVPG EDPSPSGSAA LVCRDGVDTV GSAPHDGMKY ALAYLGLRDI LATEMVCKSL HSWIRTHSLV WKCIHVEPVL
301: SGKITDPDLL RLTQKIPGDL QCLNINDCIN ITDNGLNAVL QSNLRLTKLS IARCPRLTLD GLIANLKSFN MKAVSGIKCL RIDKNFNLPK EDYEELLSLL
401: SIDKRQELHN RAPRFRHSNH FLLDCNDGYA LDIEMCPICQ SYKLVFDCPE AECSDKRSGK CRACEVCIKR CRQCGRCLER NEKFEEKFDL VYLCYKCRGD
501: PASPSLGVEK DLVSILSSGR IPSP
001: MALNFSHRPF SSHLSEEPMM IANGNWCSSF DNGRKNTGGD ASSVDILDVL PSDPFGMDIN NTFTAITGWL EDLEDDYNNQ YGRRRRDDIW IGDGNRQQLF
101: AGLSFFWNNA MQFQSSGYSY GSESLFGGAF DGSLFSTCKF PESSGENNGF GGALDGDGSC HGAFISASSV DEVLSHENAR NGEVVGSSDR CNNGEEDAYV
201: HPAIGFCLYH LRGKDLLSVS MVCKSLHTTV CDDTLLWKHI HICRPLNEKI TEEALLHLTE RAQGTMQCLR IVDCCRITDD CLKRVVARNR QVVKIGVPGC
301: TRITIDGILS VLRDLKSAGK LQVKHLQLRG LFGVTKDHYD ELIDLLNIDN KVKQTIQKPR FYHRGEACVS CDDDRALDIE MCPKCQNFKL VYDCPAEDCK
401: GKKKGSEECR ACSLCIQRCY HCGRCIIDTE YEEMFCLELL CAVCSKPTPK LTL
101: AGLSFFWNNA MQFQSSGYSY GSESLFGGAF DGSLFSTCKF PESSGENNGF GGALDGDGSC HGAFISASSV DEVLSHENAR NGEVVGSSDR CNNGEEDAYV
201: HPAIGFCLYH LRGKDLLSVS MVCKSLHTTV CDDTLLWKHI HICRPLNEKI TEEALLHLTE RAQGTMQCLR IVDCCRITDD CLKRVVARNR QVVKIGVPGC
301: TRITIDGILS VLRDLKSAGK LQVKHLQLRG LFGVTKDHYD ELIDLLNIDN KVKQTIQKPR FYHRGEACVS CDDDRALDIE MCPKCQNFKL VYDCPAEDCK
401: GKKKGSEECR ACSLCIQRCY HCGRCIIDTE YEEMFCLELL CAVCSKPTPK LTL
Arabidopsis Description
SKIP14F-box protein SKIP14 [Source:UniProtKB/Swiss-Prot;Acc:Q9LU91]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.