Factsheet for Os04t0485800-01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol

Predictor Summary:

extracellular 4
golgi 3
plasma membrane 3
endoplasmic reticulum 3
vacuole 3
plastid 1
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	secretory
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0935300-02
Os04t0684900-02
Os05t0193900-00
Os06t0138400-00
Os06t0503900-01
Os07t0169800-00
Os10t0123900-00
Os10t0124200-00
Os10t0128300-00

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G26000.1	Os04t0684900-02	AT3G44260.1	21798944
AT3G26000.1	Os06t0138400-00	AT3G44260.1	21798944
AT3G26000.1	Os06t0503900-01	AT3G44260.1	21798944
AT3G26000.1	Os07t0169800-00	AT3G44260.1	21798944
AT3G26000.1	Os10t0123900-00	AT3G44260.1	21798944
AT3G26000.1	Os10t0124200-00	AT3G44260.1	21798944
AT3G26000.1	Os10t0128300-00	AT3G44260.1	21798944
AT3G26000.1	Os01t0935300-02	AT4G02570.1	12795696
AT3G26000.1	Os05t0193900-00	AT4G02570.1	12795696

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES12408	Sorghum	cytosol	53.64	53.17
Zm00001d003250_P001	Maize	cytosol	52.1	51.64
TraesCS2B01G363000.1	Wheat	nucleus	56.73	49.05
Zm00001d025717_P001	Maize	cytosol	51.21	47.93
TraesCS2A01G320200.1	Wheat	nucleus	56.51	44.44
TraesCS2D01G343000.1	Wheat	nucleus	56.07	43.94
HORVU2Hr1G083980.2	Barley	nucleus	52.98	39.09
Bra017339.1-P	Field mustard	cytosol	31.13	36.15
CDY39176	Canola	cytosol	31.35	36.04
CDY04188	Canola	cytosol	30.68	35.64
GSMUA_Achr3P02640_001	Banana	cytosol	31.57	35.48
Bra036353.1-P	Field mustard	cytosol	30.46	35.11
CDX99734	Canola	cytosol	30.68	34.92
CDY40985	Canola	cytosol	30.02	34.61
CDX83577	Canola	cytosol	31.13	32.87
KRH42623	Soybean	cytosol	32.67	32.82
GSMUA_Achr2P20980_001	Banana	cytosol	33.77	32.28
CDY13604	Canola	cytosol	30.68	32.25
Bra025177.1-P	Field mustard	cytosol	30.68	32.25
AT3G26000.1	Thale cress	cytosol	32.01	32.01
KRH58731	Soybean	cytosol	32.23	31.53
VIT_01s0010g02380.t01	Wine grape	cytosol	33.33	31.46
PGSC0003DMT400041014	Potato	cytosol, plastid	32.23	30.42
Solyc04g024940.2.1	Tomato	cytosol, plastid	31.35	29.58
PGSC0003DMT400041013	Potato	cytosol, plastid	20.31	28.22
Os08t0428100-00	Rice	mitochondrion	15.01	23.53

Protein Annotations

Gene3D:3.80.10.10	MapMan:35.1	EntrezGene:4336212	EMBL:AK100299	ProteinID:BAF15049.1	ProteinID:BAS89792.1
ProteinID:CAD41398.2	ProteinID:CAE03159.2	ProteinID:EAZ31149.1	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0005829	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009719
GO:GO:0009788	GO:GO:0009987	InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt_Cys-con_subtyp
EnsemblPlantsGene:Os04g0485800	EnsemblPlants:Os04t0485800-01	PFAM:PF12937	PFscan:PS50181	PANTHER:PTHR44838	PANTHER:PTHR44838:SF1
UniProt:Q7X920	SMART:SM00367	SUPFAM:SSF52047	SUPFAM:SSF81383	UniParc:UPI00001B0F80	RefSeq:XP_015636704.1
SEG:seg	:	:	:	:	:

Description

F-box protein 225Cyclin-like F-box domain containing protein. (Os04t0485800-01);Cyclin-like F-box domain containing protein. (Os04t0485800-02)

Coordinates

chr4:-:24279601..24283265

Molecular Weight (calculated)

49825.1 Da

IEP (calculated)

4.323

GRAVY (calculated)

-0.136

Length

453 amino acids

Sequence
(BLAST)

001: MALNYSSCSL TSSFLMNEDC AGMMCGCGCW SEEASPLSSG GVNSLWWDEL EFELELEEEE EFDPVDLLPT DPFGMNLETT FTAAIASCIE DLTVMSSAGR
101: FGDSRDDAVF ADLSYYLNKA FVLSPEFQFG GYRGVFEGPL GFGGLSAGEG DSFGFMKNPS SSGNADDSFG FVETPPTSGN AALECGDAVE VVPVQEGGVP
201: HEGMLFALDY LGLRDILSVE RVCKTLHSAV RNEPLLWKSI HIEGDLRQRI SDAGLLHLTQ KCPDTLQCLS IACCVNITDQ GLKAVLESNP RLTKLSILGC
301: PRLTLDGLIS NLKSFNTKAV FGIKHLRVGT LFSLRKEQYE ELLSLLNTDK TQEVHNRGPR FLHANRFLSD CNDGYALDIE MCPICQNYKL VYDCPDEGCD
401: DRRSGNCKGC TVCILRCYEC GRCVDKLAFK ESFSLDWVCP NCQEKKDLSP PMK

Best Arabidopsis Sequence Match ( AT3G26000.1 )
(BLAST)

001: MALNFSHRPF SSHLSEEPMM IANGNWCSSF DNGRKNTGGD ASSVDILDVL PSDPFGMDIN NTFTAITGWL EDLEDDYNNQ YGRRRRDDIW IGDGNRQQLF
101: AGLSFFWNNA MQFQSSGYSY GSESLFGGAF DGSLFSTCKF PESSGENNGF GGALDGDGSC HGAFISASSV DEVLSHENAR NGEVVGSSDR CNNGEEDAYV
201: HPAIGFCLYH LRGKDLLSVS MVCKSLHTTV CDDTLLWKHI HICRPLNEKI TEEALLHLTE RAQGTMQCLR IVDCCRITDD CLKRVVARNR QVVKIGVPGC
301: TRITIDGILS VLRDLKSAGK LQVKHLQLRG LFGVTKDHYD ELIDLLNIDN KVKQTIQKPR FYHRGEACVS CDDDRALDIE MCPKCQNFKL VYDCPAEDCK
401: GKKKGSEECR ACSLCIQRCY HCGRCIIDTE YEEMFCLELL CAVCSKPTPK LTL

Arabidopsis Description

SKIP14F-box protein SKIP14 [Source:UniProtKB/Swiss-Prot;Acc:Q9LU91]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.