Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES12408 | Sorghum | cytosol | 74.17 | 78.56 |
| Zm00001d003250_P001 | Maize | cytosol | 71.07 | 75.27 |
| Os04t0485800-01 | Rice | cytosol, extracellular | 47.93 | 51.21 |
| TraesCS2B01G363000.1 | Wheat | nucleus | 42.36 | 39.12 |
| TraesCS2D01G343000.1 | Wheat | nucleus | 42.56 | 35.64 |
| TraesCS2A01G320200.1 | Wheat | nucleus | 42.36 | 35.59 |
| CDX99734 | Canola | cytosol | 29.13 | 35.43 |
| Bra036353.1-P | Field mustard | cytosol | 28.72 | 35.37 |
| CDY40985 | Canola | cytosol | 28.51 | 35.11 |
| Bra017339.1-P | Field mustard | cytosol | 28.1 | 34.87 |
| CDY39176 | Canola | cytosol | 28.1 | 34.52 |
| CDY04188 | Canola | cytosol | 27.69 | 34.36 |
| CDX83577 | Canola | cytosol | 28.72 | 32.4 |
| Bra025177.1-P | Field mustard | cytosol | 28.72 | 32.25 |
| CDY13604 | Canola | cytosol | 28.51 | 32.02 |
| AT3G26000.1 | Thale cress | cytosol | 28.51 | 30.46 |
| HORVU2Hr1G083980.2 | Barley | nucleus | 38.64 | 30.46 |
| GSMUA_Achr2P20980_001 | Banana | cytosol | 29.55 | 30.17 |
| KRH42623 | Soybean | cytosol | 27.89 | 29.93 |
| GSMUA_Achr3P02640_001 | Banana | cytosol | 24.79 | 29.78 |
| KRH58731 | Soybean | cytosol | 27.89 | 29.16 |
| VIT_01s0010g02380.t01 | Wine grape | cytosol | 28.51 | 28.75 |
| PGSC0003DMT400041014 | Potato | cytosol, plastid | 27.27 | 27.5 |
| Solyc04g024940.2.1 | Tomato | cytosol, plastid | 26.86 | 27.08 |
| PGSC0003DMT400041013 | Potato | cytosol, plastid | 17.36 | 25.77 |
| Zm00001d050359_P001 | Maize | plastid | 15.29 | 23.12 |
Protein Annotations
| Gene3D:3.80.10.10 | MapMan:35.1 | UniProt:A0A1D6J8W2 | ProteinID:AQK44357.1 | InterPro:F-box-like_dom_sf | InterPro:F-box_dom |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR001810 | InterPro:IPR032675 | InterPro:LRR_dom_sf |
| PFAM:PF12937 | PANTHER:PTHR44838 | PANTHER:PTHR44838:SF1 | SUPFAM:SSF81383 | UniParc:UPI0008442DF1 | EnsemblPlantsGene:Zm00001d025717 |
| EnsemblPlants:Zm00001d025717_P001 | EnsemblPlants:Zm00001d025717_T001 | SEG:seg | : | : | : |
Description
F-box protein SKIP14
Coordinates
chr10:-:127360555..127364032
Molecular Weight (calculated)
53641.3 Da
IEP (calculated)
4.449
GRAVY (calculated)
-0.038
Length
484 amino acids
Sequence
(BLAST)
(BLAST)
001: MALNYSSRSL LVTDECANMM LGCGCWSDEA SPVSSSGVNS LWWNEPEMEM KEADPVDLLP TDPFGMNLET TFTAAIASCI GDLTFMSGAG HFGSGDDDDF
101: SDDLSYYLNQ AFMLTPEPWS GAYTGGFEDS FVCGGLSGAG GMEQFSRLPP SMSYSIGVME DPYSSCHPAL SCCDNMVEED PSSSCNPALA CWDMVDVAPV
201: QEGNDAHEAM VFVLSYLGLR DILSVEMVCK SLHSAVRNEP FLWKCIHIDS RLGKKMSDAD LLCLTQKSPG SMQCLSLMHC NNITDQGLKA VLKSNLQLTK
301: YFSFVAISIE LLGIFGAFRI TYQGLIDSLR SFNMETDIGI KKLRVTNHVT ASEAQYEELL SLMKIDKKMA LHKQEPRIFH SGRLLLDLYG GYVPDSFVPE
401: LHDEFALDIE KCPLCPNYKL VYDCPSKECK NSRHSTCRGC IVCIWRCLLC GRCIDIANVF QESFCLGKLC RDCVKYEDLL PTEK
101: SDDLSYYLNQ AFMLTPEPWS GAYTGGFEDS FVCGGLSGAG GMEQFSRLPP SMSYSIGVME DPYSSCHPAL SCCDNMVEED PSSSCNPALA CWDMVDVAPV
201: QEGNDAHEAM VFVLSYLGLR DILSVEMVCK SLHSAVRNEP FLWKCIHIDS RLGKKMSDAD LLCLTQKSPG SMQCLSLMHC NNITDQGLKA VLKSNLQLTK
301: YFSFVAISIE LLGIFGAFRI TYQGLIDSLR SFNMETDIGI KKLRVTNHVT ASEAQYEELL SLMKIDKKMA LHKQEPRIFH SGRLLLDLYG GYVPDSFVPE
401: LHDEFALDIE KCPLCPNYKL VYDCPSKECK NSRHSTCRGC IVCIWRCLLC GRCIDIANVF QESFCLGKLC RDCVKYEDLL PTEK
001: MALNFSHRPF SSHLSEEPMM IANGNWCSSF DNGRKNTGGD ASSVDILDVL PSDPFGMDIN NTFTAITGWL EDLEDDYNNQ YGRRRRDDIW IGDGNRQQLF
101: AGLSFFWNNA MQFQSSGYSY GSESLFGGAF DGSLFSTCKF PESSGENNGF GGALDGDGSC HGAFISASSV DEVLSHENAR NGEVVGSSDR CNNGEEDAYV
201: HPAIGFCLYH LRGKDLLSVS MVCKSLHTTV CDDTLLWKHI HICRPLNEKI TEEALLHLTE RAQGTMQCLR IVDCCRITDD CLKRVVARNR QVVKIGVPGC
301: TRITIDGILS VLRDLKSAGK LQVKHLQLRG LFGVTKDHYD ELIDLLNIDN KVKQTIQKPR FYHRGEACVS CDDDRALDIE MCPKCQNFKL VYDCPAEDCK
401: GKKKGSEECR ACSLCIQRCY HCGRCIIDTE YEEMFCLELL CAVCSKPTPK LTL
101: AGLSFFWNNA MQFQSSGYSY GSESLFGGAF DGSLFSTCKF PESSGENNGF GGALDGDGSC HGAFISASSV DEVLSHENAR NGEVVGSSDR CNNGEEDAYV
201: HPAIGFCLYH LRGKDLLSVS MVCKSLHTTV CDDTLLWKHI HICRPLNEKI TEEALLHLTE RAQGTMQCLR IVDCCRITDD CLKRVVARNR QVVKIGVPGC
301: TRITIDGILS VLRDLKSAGK LQVKHLQLRG LFGVTKDHYD ELIDLLNIDN KVKQTIQKPR FYHRGEACVS CDDDRALDIE MCPKCQNFKL VYDCPAEDCK
401: GKKKGSEECR ACSLCIQRCY HCGRCIIDTE YEEMFCLELL CAVCSKPTPK LTL
Arabidopsis Description
SKIP14F-box protein SKIP14 [Source:UniProtKB/Swiss-Prot;Acc:Q9LU91]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.