Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G320200.1 | Wheat | nucleus | 89.97 | 90.28 |
| TraesCS2B01G363000.1 | Wheat | nucleus | 78.72 | 86.83 |
| HORVU2Hr1G083980.2 | Barley | nucleus | 73.01 | 68.73 |
| Os04t0485800-01 | Rice | cytosol, extracellular | 43.94 | 56.07 |
| EES12408 | Sorghum | cytosol | 37.89 | 47.92 |
| Zm00001d003250_P001 | Maize | cytosol | 37.02 | 46.83 |
| Zm00001d025717_P001 | Maize | cytosol | 35.64 | 42.56 |
| GSMUA_Achr3P02640_001 | Banana | cytosol | 23.88 | 34.24 |
| CDY04188 | Canola | cytosol | 22.66 | 33.59 |
| Bra017339.1-P | Field mustard | cytosol | 22.66 | 33.59 |
| Bra036353.1-P | Field mustard | cytosol | 22.32 | 32.82 |
| CDY39176 | Canola | cytosol | 22.32 | 32.74 |
| CDY40985 | Canola | cytosol | 22.15 | 32.57 |
| CDX99734 | Canola | cytosol | 22.32 | 32.41 |
| GSMUA_Achr2P20980_001 | Banana | cytosol | 25.95 | 31.65 |
| CDX83577 | Canola | cytosol | 23.01 | 31.0 |
| AT3G26000.1 | Thale cress | cytosol | 24.05 | 30.68 |
| KRH42623 | Soybean | cytosol | 23.88 | 30.6 |
| CDY13604 | Canola | cytosol | 22.32 | 29.93 |
| KRH58731 | Soybean | cytosol | 23.88 | 29.81 |
| Bra025177.1-P | Field mustard | cytosol | 21.97 | 29.47 |
| VIT_01s0010g02380.t01 | Wine grape | cytosol | 24.22 | 29.17 |
| Solyc04g024940.2.1 | Tomato | cytosol, plastid | 23.7 | 28.54 |
| PGSC0003DMT400041014 | Potato | cytosol, plastid | 23.53 | 28.33 |
| PGSC0003DMT400041013 | Potato | cytosol, plastid | 14.71 | 26.07 |
| TraesCS2D01G435900.1 | Wheat | cytosol, mitochondrion, peroxisome | 14.19 | 24.7 |
| TraesCS2D01G435600.1 | Wheat | cytosol | 13.67 | 23.8 |
Protein Annotations
| EnsemblPlants:TraesCS2D01G343000.1 | EnsemblPlantsGene:TraesCS2D01G343000 | Gene3D:3.80.10.10 | InterPro:IPR032675 | InterPro:LRR_dom_sf | PANTHER:PTHR44838 |
| PANTHER:PTHR44838:SF1 | SEG:seg | SUPFAM:SSF52047 | MapMan:35.1 | : | : |
Description
No Description!
Coordinates
chr2D:-:439440680..439443141
Molecular Weight (calculated)
62138.4 Da
IEP (calculated)
6.069
GRAVY (calculated)
-0.106
Length
578 amino acids
Sequence
(BLAST)
(BLAST)
001: MCILHRKKHQ KKEGVRRRSW RSRRRRIGAQ GNLEVIMALN YPSCSFLVSD ECSALMRGCG CWSEEASPLS SPGVNSRRWD DFEPDPADLL PADPFGMNLG
101: NTITAAIASC LDLTVMSGAG RFGSSDGGTA DLSFYLNHAI AVSRGPSSYL PGGFGRAFEG PFVFGGLYEA GGANCCQGLP PLVSCSRSIV PGEDPSTSGS
201: AALLCRDGVD AMGASCSRPI VPGEDPSTSG SAALLCCEGV DAVGASCSRP IVPGEDPSTS CSAALVCRDG VDAVGASCSR PIVPVEDPSP SGSAALVCCD
301: GVDAVGSAPH DGMMYALAYL GLRDILATEM VCKSLHSWIR SELSWKCIHI EPVLSGKISD PDLLFLTQKI PGDLQCLNIN DCINITDNGL NAVLQSNPTL
401: TKLSIARCPR LTLDGLIANL KSFNMKAVSG IKSLRIDKNF NLPKEDYEEL LSLLSIDKRQ ELHNRAPRFR HSNHFLLDCN DGYALDIEMC PICQSYKLVF
501: DCPEVECSDK RSGKCRACEV CIKRCRQCGR CLERNEKFEE KFDLVYLCYK CRGDPASPSL GVEKDLVSIL SSGRIPSP
101: NTITAAIASC LDLTVMSGAG RFGSSDGGTA DLSFYLNHAI AVSRGPSSYL PGGFGRAFEG PFVFGGLYEA GGANCCQGLP PLVSCSRSIV PGEDPSTSGS
201: AALLCRDGVD AMGASCSRPI VPGEDPSTSG SAALLCCEGV DAVGASCSRP IVPGEDPSTS CSAALVCRDG VDAVGASCSR PIVPVEDPSP SGSAALVCCD
301: GVDAVGSAPH DGMMYALAYL GLRDILATEM VCKSLHSWIR SELSWKCIHI EPVLSGKISD PDLLFLTQKI PGDLQCLNIN DCINITDNGL NAVLQSNPTL
401: TKLSIARCPR LTLDGLIANL KSFNMKAVSG IKSLRIDKNF NLPKEDYEEL LSLLSIDKRQ ELHNRAPRFR HSNHFLLDCN DGYALDIEMC PICQSYKLVF
501: DCPEVECSDK RSGKCRACEV CIKRCRQCGR CLERNEKFEE KFDLVYLCYK CRGDPASPSL GVEKDLVSIL SSGRIPSP
001: MALNFSHRPF SSHLSEEPMM IANGNWCSSF DNGRKNTGGD ASSVDILDVL PSDPFGMDIN NTFTAITGWL EDLEDDYNNQ YGRRRRDDIW IGDGNRQQLF
101: AGLSFFWNNA MQFQSSGYSY GSESLFGGAF DGSLFSTCKF PESSGENNGF GGALDGDGSC HGAFISASSV DEVLSHENAR NGEVVGSSDR CNNGEEDAYV
201: HPAIGFCLYH LRGKDLLSVS MVCKSLHTTV CDDTLLWKHI HICRPLNEKI TEEALLHLTE RAQGTMQCLR IVDCCRITDD CLKRVVARNR QVVKIGVPGC
301: TRITIDGILS VLRDLKSAGK LQVKHLQLRG LFGVTKDHYD ELIDLLNIDN KVKQTIQKPR FYHRGEACVS CDDDRALDIE MCPKCQNFKL VYDCPAEDCK
401: GKKKGSEECR ACSLCIQRCY HCGRCIIDTE YEEMFCLELL CAVCSKPTPK LTL
101: AGLSFFWNNA MQFQSSGYSY GSESLFGGAF DGSLFSTCKF PESSGENNGF GGALDGDGSC HGAFISASSV DEVLSHENAR NGEVVGSSDR CNNGEEDAYV
201: HPAIGFCLYH LRGKDLLSVS MVCKSLHTTV CDDTLLWKHI HICRPLNEKI TEEALLHLTE RAQGTMQCLR IVDCCRITDD CLKRVVARNR QVVKIGVPGC
301: TRITIDGILS VLRDLKSAGK LQVKHLQLRG LFGVTKDHYD ELIDLLNIDN KVKQTIQKPR FYHRGEACVS CDDDRALDIE MCPKCQNFKL VYDCPAEDCK
401: GKKKGSEECR ACSLCIQRCY HCGRCIIDTE YEEMFCLELL CAVCSKPTPK LTL
Arabidopsis Description
SKIP14F-box protein SKIP14 [Source:UniProtKB/Swiss-Prot;Acc:Q9LU91]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.