Factsheet for TraesCS2D01G435600.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
mitochondrion 1
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, peroxisome, plastid, secretory
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G457400.1
TraesCS3B01G497300.1
TraesCS3D01G450200.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G01620.1	TraesCS3A01G457400.1	AT4G02570.1	12795696
AT2G01620.1	TraesCS3B01G497300.1	AT4G02570.1	12795696
AT2G01620.1	TraesCS3D01G450200.1	AT4G02570.1	12795696

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G458800.1	Wheat	cytosol, plasma membrane, plastid	89.76	93.71
TraesCS2D01G435900.1	Wheat	cytosol, mitochondrion, peroxisome	90.36	90.36
HORVU2Hr1G101900.5	Barley	plasma membrane, plastid	86.75	87.54
Zm00001d050359_P001	Maize	plastid	57.83	60.0
EES13867	Sorghum	plastid	56.63	57.85
Os08t0428100-00	Rice	mitochondrion	40.96	47.06
KRH41674	Soybean	cytosol, plasma membrane, plastid	32.23	37.68
KRH60371	Soybean	cytosol, plasma membrane, plastid	35.54	37.34
VIT_01s0011g05490.t01	Wine grape	cytosol	36.45	36.67
GSMUA_Achr5P05920_001	Banana	cytosol, golgi	32.23	34.74
PGSC0003DMT400081916	Potato	cytosol, plasma membrane	30.42	33.22
Solyc01g005450.2.1	Tomato	extracellular	30.12	32.57
Bra024867.1-P	Field mustard	extracellular	21.99	31.6
CDY49755	Canola	extracellular	21.69	31.03
CDY17656	Canola	extracellular	21.69	31.03
Bra024868.1-P	Field mustard	cytosol	26.81	30.9
Bra026645.1-P	Field mustard	cytosol	27.71	30.77
CDY48808	Canola	cytosol	26.81	30.27
AT2G01620.1	Thale cress	cytosol	26.2	29.79
CDY36244	Canola	cytosol	20.18	29.78
CDY09428	Canola	cytosol	26.81	29.77
CDY17657	Canola	cytosol	23.49	29.32
TraesCS2D01G343000.1	Wheat	nucleus	23.8	13.67

Protein Annotations

EnsemblPlants:TraesCS2D01G435600.1	EnsemblPlantsGene:TraesCS2D01G435600	Gene3D:3.80.10.10	InterPro:4Fe4S_Fe_S_CS	InterPro:IPR032675	InterPro:LRR_dom_sf
PANTHER:PTHR45375	ScanProsite:PS00198	SEG:seg	MapMan:35.1	:	:

Description

No Description!

Coordinates

chr2D:-:546683808..546688177

Molecular Weight (calculated)

36924.6 Da

IEP (calculated)

6.951

GRAVY (calculated)

-0.213

Length

332 amino acids

Sequence
(BLAST)

001: MSRQPVSEVT TDRTMLPTTA TASTPPPPPA PPPGEPHAAL FFALGYMRLP ELLACWRVCR LLGEAVAVDP LLWRRVAVER PLSGRMTDQV LLKLTARAEG
101: TLRSLRLFGC VHVSDAGLLR VVEHNPRVTE IYVPACTGLT GDGVVKIVQL LHEHKGNISR LRLDGISGMS KHHLDIIMSL MCKGNPQGQQ DRSPLFYNHR
201: AREALNTNDE RPIDVDLCPV CATVGPVFDC TRDDCRKVRD SLWRCRGCYF CFPKCEKCGG CVSSEDIVDA DLACSDLMCL DCWFTVPKCS TCNRPYCGRH
301: ENLMVSLSMA GQFSCQRCKE PDASHENQED DY

Best Arabidopsis Sequence Match ( AT2G01620.1 )
(BLAST)

001: MKTELEEEEE EEWRSVHEVL LIVLPYLHSL FELLSMIRVS RSLRDAIRDE TALWTKLVIE PPLSSRLTDD ILSEFSSKSA GKLKTLILRQ CLMVTNKGLR
101: RVVDANPLIT KIIVPGCSGL TPEGIMECVE SLSKNNHKLE TLHINGVNGF TKQHLSALYT YLSSEGTIDL EVCPKCDEVR MIPSCSRESC NQKQRKCRGC
201: WLCIPRCAEC AVCLVGSDTE SQEAACGNDD VLCLECWLVL PKCRFCNKPY CTNHSSRRHE IAITDAASRP SFECEACYYR AGTNPYEVDY QI

Arabidopsis Description

SKIP28F-box protein SKIP28 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZU90]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.