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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 2
  • mitochondrion 1
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:plastid
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra000874.1-P
Bra003735.1-P
Bra008231.1-P
Bra012213.1-P
Bra012214.1-P
Bra012216.1-P
Bra015801.1-P
Bra025795.1-P
Bra036257.1-P
Bra039504.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G01620.1 Bra012213.1-P AT1G20140.1 12795696
AT2G01620.1 Bra012214.1-P AT1G20140.1 12795696
AT2G01620.1 Bra012216.1-P AT1G20140.1 12795696
AT2G01620.1 Bra025795.1-P AT1G20140.1 12795696
AT2G01620.1 Bra003735.1-P AT1G75950.1 12795696
AT2G01620.1 Bra008231.1-P AT1G75950.1 12795696
AT2G01620.1 Bra015801.1-P AT1G75950.1 12795696
AT2G01620.1 Bra003735.1-P AT1G75950.1 21798944
AT2G01620.1 Bra008231.1-P AT1G75950.1 21798944
AT2G01620.1 Bra015801.1-P AT1G75950.1 21798944
AT2G01620.1 Bra039504.1-P AT2G03170.1 12795696
AT2G01620.1 Bra000874.1-P AT4G02570.1 12795696
AT2G01620.1 Bra036257.1-P AT4G02570.1 12795696
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY48808 Canola cytosol 79.93 81.29
CDY09428 Canola cytosol 81.27 81.27
AT2G01620.1 Thale cress cytosol 72.91 74.66
Bra024868.1-P Field mustard cytosol 65.55 68.06
Bra024867.1-P Field mustard extracellular 51.51 66.67
KRH60371 Soybean cytosol, plasma membrane, plastid 37.79 35.76
KRH41674 Soybean cytosol, plasma membrane, plastid 33.78 35.56
Solyc01g005450.2.1 Tomato extracellular 36.45 35.5
PGSC0003DMT400081916 Potato cytosol, plasma membrane 35.79 35.2
VIT_01s0011g05490.t01 Wine grape cytosol 37.79 34.24
TraesCS2B01G458800.1 Wheat cytosol, plasma membrane, plastid 32.44 30.5
TraesCS2A01G438500.1 Wheat cytosol, plasma membrane, plastid 32.44 30.5
HORVU2Hr1G101900.5 Barley plasma membrane, plastid 32.78 29.79
EES13867 Sorghum plastid 32.11 29.54
Zm00001d050359_P001 Maize plastid 31.44 29.38
TraesCS2D01G435900.1 Wheat cytosol, mitochondrion, peroxisome 32.11 28.92
GSMUA_Achr5P05920_001 Banana cytosol, golgi 29.43 28.57
TraesCS2D01G435600.1 Wheat cytosol 30.77 27.71
Os08t0428100-00 Rice mitochondrion 24.75 25.61
Bra039085.1-P Field mustard cytosol 24.08 19.15
Bra017339.1-P Field mustard cytosol 24.75 18.97
Bra036353.1-P Field mustard cytosol 23.75 18.07
Bra025177.1-P Field mustard cytosol 23.75 16.47
Protein Annotations
EnsemblPlants:Bra026645.1EnsemblPlants:Bra026645.1-PEnsemblPlantsGene:Bra026645Gene3D:3.80.10.10InterPro:IPR032675InterPro:LRR_dom_sf
PANTHER:PTHR45375SEG:segSUPFAM:SSF52047UniParc:UPI0002546C5DUniProt:M4ECY5MapMan:35.1
Description
AT2G01620 (E=1e-128) MEE11 | MEE11 (maternal effect embryo arrest 11)
Coordinates
chrA02:-:21074677..21075764
Molecular Weight (calculated)
33639.3 Da
IEP (calculated)
6.419
GRAVY (calculated)
-0.285
Length
299 amino acids
Sequence
(BLAST)
001: MRTEEKEDEE EEEQWPSSRS AHEVLLIVLP YLHSLFELLS MTGVSRSLRD AIRDETALWT KIVVEPSLSS RLTDDILWDI TSKSAGKLNT LILRQCLRIT
101: DKGLRRVVDA NPLIRKIIVP GCTELTPEGI IGCVESLSKN NHNVETLHIN GVHRFTKDHL SALSTHLPHE GAIDVEVCPK CDLVKMIPSC SRASCNRGRR
201: QERKCRGCWF CVPRCTECAV CLGSDTEIQE AACGGDSLCL ECWLVLPKCR FCNKPYCTSH SSLRHDIATN DSSSPPMFEC QACHYRAGTN PYDAFDYQI
Best Arabidopsis Sequence Match ( AT2G01620.1 )
(BLAST)
001: MKTELEEEEE EEWRSVHEVL LIVLPYLHSL FELLSMIRVS RSLRDAIRDE TALWTKLVIE PPLSSRLTDD ILSEFSSKSA GKLKTLILRQ CLMVTNKGLR
101: RVVDANPLIT KIIVPGCSGL TPEGIMECVE SLSKNNHKLE TLHINGVNGF TKQHLSALYT YLSSEGTIDL EVCPKCDEVR MIPSCSRESC NQKQRKCRGC
201: WLCIPRCAEC AVCLVGSDTE SQEAACGNDD VLCLECWLVL PKCRFCNKPY CTNHSSRRHE IAITDAASRP SFECEACYYR AGTNPYEVDY QI
Arabidopsis Description
SKIP28F-box protein SKIP28 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZU90]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.