CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 7
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES04173

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G01620.1	EES04173	AT4G02570.1	12795696

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d050359_P001	Maize	plastid	84.92	86.25
TraesCS2A01G438500.1	Wheat	cytosol, plasma membrane, plastid	60.92	62.26
TraesCS2B01G458800.1	Wheat	cytosol, plasma membrane, plastid	60.62	61.95
HORVU2Hr1G101900.5	Barley	plasma membrane, plastid	61.54	60.79
TraesCS2D01G435900.1	Wheat	cytosol, mitochondrion, peroxisome	60.62	59.34
TraesCS2D01G435600.1	Wheat	cytosol	57.85	56.63
Os08t0428100-00	Rice	mitochondrion	47.08	52.94
VIT_01s0011g05490.t01	Wine grape	cytosol	39.08	38.48
KRH60371	Soybean	cytosol, plasma membrane, plastid	35.38	36.39
Solyc01g005450.2.1	Tomato	extracellular	34.15	36.16
PGSC0003DMT400081916	Potato	cytosol, plasma membrane	33.23	35.53
GSMUA_Achr5P05920_001	Banana	cytosol, golgi	33.54	35.39
KRH41674	Soybean	cytosol, plasma membrane, plastid	29.54	33.8
CDY48808	Canola	cytosol	30.46	33.67
Bra024868.1-P	Field mustard	cytosol	29.23	32.99
Bra024867.1-P	Field mustard	extracellular	23.38	32.9
CDY09428	Canola	cytosol	30.15	32.78
AT2G01620.1	Thale cress	cytosol	29.23	32.53
Bra026645.1-P	Field mustard	cytosol	29.54	32.11
CDY36244	Canola	cytosol	22.15	32.0
CDY49755	Canola	extracellular	22.77	31.9
CDY17656	Canola	extracellular	22.77	31.9
CDY17657	Canola	cytosol	25.54	31.2
EES12408	Sorghum	cytosol	24.62	17.51

Protein Annotations

EnsemblPlants:EES13867	EnsemblPlantsGene:SORBI_3007G132500	EntrezGene:8075640	Gene3D:3.80.10.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:4Fe4S_Fe_S_CS	InterPro:F-box-like_dom_sf	InterPro:IPR032675	InterPro:LRR_dom_sf	PANTHER:PTHR45375
ProteinID:EES13867	ProteinID:EES13867.1	RefSeq:XP_002444372.1	ScanProsite:PS00198	SEG:seg	SUPFAM:SSF52047
SUPFAM:SSF81383	UniParc:UPI0001A87878	UniProt:C5YL35	MapMan:35.1	:	:

Description

hypothetical protein

Coordinates

chr7:+:55237300..55246723

Molecular Weight (calculated)

35676.2 Da

IEP (calculated)

7.922

GRAVY (calculated)

-0.107

Length

325 amino acids

Sequence
(BLAST)

001: MLPTTATASA PPPPPAAGPA SSSSSSSPGE PHAALLLALG YMRLRELLAC ARACRSLREA VAGDPLLWLR LVVESPLSHR ITDEALLALT DRARGRLRSL
101: HLLGCPRVSD AGLLRVVERN PNVTELFVPR CTGLTADGLV KIIHFLHGHK GNLSRVRLHG ICKMTNHHLD VIKSLVCRGS QQQDAQALYY NHRVHEVLNT
201: DDGRPIDVDV CPLCRNVRLV FDCTRKNCRE VKDGWSRCRG CFFCVARCET CGGCIDLEEL GESGLACSDF LCMDCWLKLP KCCTCNRPYC ERHSNLKENL
301: SASGEFTCQE CTAFATSLKS LGEGY

Best Arabidopsis Sequence Match ( AT2G01620.1 )
(BLAST)

001: MKTELEEEEE EEWRSVHEVL LIVLPYLHSL FELLSMIRVS RSLRDAIRDE TALWTKLVIE PPLSSRLTDD ILSEFSSKSA GKLKTLILRQ CLMVTNKGLR
101: RVVDANPLIT KIIVPGCSGL TPEGIMECVE SLSKNNHKLE TLHINGVNGF TKQHLSALYT YLSSEGTIDL EVCPKCDEVR MIPSCSRESC NQKQRKCRGC
201: WLCIPRCAEC AVCLVGSDTE SQEAACGNDD VLCLECWLVL PKCRFCNKPY CTNHSSRRHE IAITDAASRP SFECEACYYR AGTNPYEVDY QI

Arabidopsis Description

SKIP28F-box protein SKIP28 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZU90]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.