Factsheet for TraesCS2B01G458800.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid, cytosol

Predictor Summary:

plastid 2
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plasma membrane, plastid
Any Predictor:	cytosol, plasma membrane, plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G457400.1
TraesCS3B01G497300.1
TraesCS3D01G450200.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G01620.1	TraesCS3A01G457400.1	AT4G02570.1	12795696
AT2G01620.1	TraesCS3B01G497300.1	AT4G02570.1	12795696
AT2G01620.1	TraesCS3D01G450200.1	AT4G02570.1	12795696

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G435600.1	Wheat	cytosol	93.71	89.76
HORVU2Hr1G101900.5	Barley	plasma membrane, plastid	91.51	88.45
Zm00001d050359_P001	Maize	plastid	63.21	62.81
EES13867	Sorghum	plastid	61.95	60.62
Os08t0428100-00	Rice	mitochondrion	44.03	48.44
KRH60371	Soybean	cytosol, plasma membrane, plastid	38.05	38.29
VIT_01s0011g05490.t01	Wine grape	cytosol	39.31	37.88
KRH41674	Soybean	cytosol, plasma membrane, plastid	33.65	37.68
GSMUA_Achr5P05920_001	Banana	cytosol, golgi	33.65	34.74
PGSC0003DMT400081916	Potato	cytosol, plasma membrane	33.02	34.54
Solyc01g005450.2.1	Tomato	extracellular	33.02	34.2
Bra024867.1-P	Field mustard	extracellular	23.9	32.9
Bra024868.1-P	Field mustard	cytosol	29.56	32.64
AT2G01620.1	Thale cress	cytosol	29.87	32.53
Bra026645.1-P	Field mustard	cytosol	30.5	32.44
CDY49755	Canola	extracellular	23.58	32.33
CDY17656	Canola	extracellular	23.58	32.33
CDY48808	Canola	cytosol	29.56	31.97
CDY36244	Canola	cytosol	22.33	31.56
CDY09428	Canola	cytosol	29.56	31.44
CDY17657	Canola	cytosol	26.1	31.2
TraesCS2B01G363000.1	Wheat	nucleus	26.1	15.84

Protein Annotations

EnsemblPlants:TraesCS2B01G458800.1	EnsemblPlantsGene:TraesCS2B01G458800	Gene3D:3.80.10.10	InterPro:4Fe4S_Fe_S_CS	InterPro:IPR032675	InterPro:LRR_dom_sf
PANTHER:PTHR45375	ScanProsite:PS00198	SEG:seg	MapMan:35.1	:	:

Description

No Description!

Coordinates

chr2B:-:653594210..653598175

Molecular Weight (calculated)

35360.9 Da

IEP (calculated)

7.268

GRAVY (calculated)

-0.175

Length

318 amino acids

Sequence
(BLAST)

001: MLPTTATAST PPPPPAPPPG EPHAALFLAL GYMRLPELLA CWRVCRLLGE AVAGDPLLWR RLAVEPPLSG RVTDQVLLKL TARADGTLRS LRLFGCLHVS
101: DAGLLRVVEH NPRVTEIYVP ACTGLTGDGV VKIVQLLHER KGNISRLRLD GISGMSKHHL DIIMSLMCKG NPQGQQDRSP LFYNHRAREA LNTNDERPID
201: VDVCPVCANV RPVFDCTRDD CRKVRDSLWR CRGCYFCFPR CEKCGGCISP EDIVEADLAC SDLMCLDCWL TVPKCSTCNR PYCERHANLM VSLSMAGQFS
301: CQRCKELDAS HENQEDNY

Best Arabidopsis Sequence Match ( AT2G01620.1 )
(BLAST)

001: MKTELEEEEE EEWRSVHEVL LIVLPYLHSL FELLSMIRVS RSLRDAIRDE TALWTKLVIE PPLSSRLTDD ILSEFSSKSA GKLKTLILRQ CLMVTNKGLR
101: RVVDANPLIT KIIVPGCSGL TPEGIMECVE SLSKNNHKLE TLHINGVNGF TKQHLSALYT YLSSEGTIDL EVCPKCDEVR MIPSCSRESC NQKQRKCRGC
201: WLCIPRCAEC AVCLVGSDTE SQEAACGNDD VLCLECWLVL PKCRFCNKPY CTNHSSRRHE IAITDAASRP SFECEACYYR AGTNPYEVDY QI

Arabidopsis Description

SKIP28F-box protein SKIP28 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZU90]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.