Subcellular Localization
min:
: max
Winner_takes_all: cytosol, plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 1
- cytosol 2
- extracellular 2
- golgi 2
- plasma membrane 3
- endoplasmic reticulum 2
- vacuole 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400063662 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G01620.1 | PGSC0003DMT400063662 | AT4G02570.1 | 12795696 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc01g005450.2.1 | Tomato | extracellular | 83.55 | 82.74 |
| KRH41674 | Soybean | cytosol, plasma membrane, plastid | 41.12 | 44.01 |
| KRH60371 | Soybean | cytosol, plasma membrane, plastid | 45.72 | 43.99 |
| VIT_01s0011g05490.t01 | Wine grape | cytosol | 47.04 | 43.33 |
| Bra024867.1-P | Field mustard | extracellular | 28.29 | 37.23 |
| CDY49755 | Canola | extracellular | 28.29 | 37.07 |
| CDY17656 | Canola | extracellular | 28.29 | 37.07 |
| AT2G01620.1 | Thale cress | cytosol | 34.54 | 35.96 |
| CDY09428 | Canola | cytosol | 35.2 | 35.79 |
| Bra026645.1-P | Field mustard | cytosol | 35.2 | 35.79 |
| CDY48808 | Canola | cytosol | 34.21 | 35.37 |
| Bra024868.1-P | Field mustard | cytosol | 32.24 | 34.03 |
| CDY17657 | Canola | cytosol | 29.61 | 33.83 |
| CDY36244 | Canola | cytosol | 24.67 | 33.33 |
| EES13867 | Sorghum | plastid | 35.53 | 33.23 |
| TraesCS2B01G458800.1 | Wheat | cytosol, plasma membrane, plastid | 34.54 | 33.02 |
| TraesCS2A01G438500.1 | Wheat | cytosol, plasma membrane, plastid | 34.54 | 33.02 |
| Zm00001d050359_P001 | Maize | plastid | 34.54 | 32.81 |
| TraesCS2D01G435900.1 | Wheat | cytosol, mitochondrion, peroxisome | 34.87 | 31.93 |
| HORVU2Hr1G101900.5 | Barley | plasma membrane, plastid | 34.54 | 31.91 |
| TraesCS2D01G435600.1 | Wheat | cytosol | 33.22 | 30.42 |
| GSMUA_Achr5P05920_001 | Banana | cytosol, golgi | 28.29 | 27.92 |
| Os08t0428100-00 | Rice | mitochondrion | 23.36 | 24.57 |
| PGSC0003DMT400017823 | Potato | cytosol | 26.32 | 19.66 |
| PGSC0003DMT400041014 | Potato | cytosol, plastid | 29.93 | 18.96 |
| PGSC0003DMT400052249 | Potato | cytosol | 27.96 | 17.31 |
| PGSC0003DMT400041013 | Potato | cytosol, plastid | 13.16 | 12.27 |
Protein Annotations
| Gene3D:1.20.1280.50 | EntrezGene:102586841 | Gene3D:3.80.10.10 | MapMan:35.1 | InterPro:4Fe4S_Fe_S_CS | InterPro:F-box-like_dom_sf |
| InterPro:F-box_dom | GO:GO:0000003 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0007275 |
| GO:GO:0008150 | GO:GO:0009790 | GO:GO:0009791 | GO:GO:0009793 | InterPro:IPR001810 | InterPro:IPR032675 |
| InterPro:LRR_dom_sf | UniProt:M1D5A2 | PFAM:PF12937 | EnsemblPlantsGene:PGSC0003DMG402032158 | PGSC:PGSC0003DMG402032158 | EnsemblPlants:PGSC0003DMT400081916 |
| ScanProsite:PS00198 | PFscan:PS50181 | PANTHER:PTHR45375 | SUPFAM:SSF52047 | SUPFAM:SSF81383 | UniParc:UPI0002952559 |
| RefSeq:XP_006354108.1 | SEG:seg | : | : | : | : |
Description
F-box protein family [Source:PGSC_GENE;Acc:PGSC0003DMG402032158]
Coordinates
chr1:-:1017725..1020684
Molecular Weight (calculated)
34773.7 Da
IEP (calculated)
7.944
GRAVY (calculated)
-0.117
Length
304 amino acids
Sequence
(BLAST)
(BLAST)
001: MTQTSSQLSP PHEAMFLILP YLPLYELLSM SQVCKSFRDA LKHDILPWLN VIVEKPINTR FSDDFLVKIM SKAKGRMNIV ALRNCFKITD EGLLQVIASN
101: PFINKLYLQG CTSLTIEGVI GAVKLLTKPN HKLKNLAISG IYNVKIEDFQ TLCYLMGINQ MQMKQIKKNY YHMRCELYTF KQESQPSIDV DICPKCGEIR
201: EVFDCPRDSC KKRMQQQQRQ LLIECRGCFL CVPRCEECGV CTKDEELGEA ACVDILCLNC WLHLPKCSFC NKAYCNQHAY QQHVGSSLGF LCSECSFQST
301: QSSH
101: PFINKLYLQG CTSLTIEGVI GAVKLLTKPN HKLKNLAISG IYNVKIEDFQ TLCYLMGINQ MQMKQIKKNY YHMRCELYTF KQESQPSIDV DICPKCGEIR
201: EVFDCPRDSC KKRMQQQQRQ LLIECRGCFL CVPRCEECGV CTKDEELGEA ACVDILCLNC WLHLPKCSFC NKAYCNQHAY QQHVGSSLGF LCSECSFQST
301: QSSH
001: MKTELEEEEE EEWRSVHEVL LIVLPYLHSL FELLSMIRVS RSLRDAIRDE TALWTKLVIE PPLSSRLTDD ILSEFSSKSA GKLKTLILRQ CLMVTNKGLR
101: RVVDANPLIT KIIVPGCSGL TPEGIMECVE SLSKNNHKLE TLHINGVNGF TKQHLSALYT YLSSEGTIDL EVCPKCDEVR MIPSCSRESC NQKQRKCRGC
201: WLCIPRCAEC AVCLVGSDTE SQEAACGNDD VLCLECWLVL PKCRFCNKPY CTNHSSRRHE IAITDAASRP SFECEACYYR AGTNPYEVDY QI
101: RVVDANPLIT KIIVPGCSGL TPEGIMECVE SLSKNNHKLE TLHINGVNGF TKQHLSALYT YLSSEGTIDL EVCPKCDEVR MIPSCSRESC NQKQRKCRGC
201: WLCIPRCAEC AVCLVGSDTE SQEAACGNDD VLCLECWLVL PKCRFCNKPY CTNHSSRRHE IAITDAASRP SFECEACYYR AGTNPYEVDY QI
Arabidopsis Description
SKIP28F-box protein SKIP28 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZU90]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.