Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 1
- extracellular 5
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 4
- golgi 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc01g099290.2.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G01620.1 | Solyc01g099290.2.1 | AT4G02570.1 | 12795696 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400081916 | Potato | cytosol, plasma membrane | 82.74 | 83.55 |
| VIT_01s0011g05490.t01 | Wine grape | cytosol | 47.56 | 44.24 |
| KRH60371 | Soybean | cytosol, plasma membrane, plastid | 44.3 | 43.04 |
| KRH41674 | Soybean | cytosol, plasma membrane, plastid | 39.74 | 42.96 |
| Bra026645.1-P | Field mustard | cytosol | 35.5 | 36.45 |
| Bra024867.1-P | Field mustard | extracellular | 27.04 | 35.93 |
| CDY49755 | Canola | extracellular | 27.04 | 35.78 |
| CDY17656 | Canola | extracellular | 27.04 | 35.78 |
| AT2G01620.1 | Thale cress | cytosol | 33.88 | 35.62 |
| CDY09428 | Canola | cytosol | 34.53 | 35.45 |
| CDY48808 | Canola | cytosol | 33.88 | 35.37 |
| EES13867 | Sorghum | plastid | 36.16 | 34.15 |
| Zm00001d050359_P001 | Maize | plastid | 35.5 | 34.06 |
| CDY17657 | Canola | cytosol | 29.32 | 33.83 |
| Bra024868.1-P | Field mustard | cytosol | 31.6 | 33.68 |
| TraesCS2A01G438500.1 | Wheat | cytosol, plasma membrane, plastid | 34.85 | 33.65 |
| TraesCS2B01G458800.1 | Wheat | cytosol, plasma membrane, plastid | 34.2 | 33.02 |
| CDY36244 | Canola | cytosol | 24.1 | 32.89 |
| TraesCS2D01G435900.1 | Wheat | cytosol, mitochondrion, peroxisome | 34.85 | 32.23 |
| HORVU2Hr1G101900.5 | Barley | plasma membrane, plastid | 34.2 | 31.91 |
| TraesCS2D01G435600.1 | Wheat | cytosol | 32.57 | 30.12 |
| GSMUA_Achr5P05920_001 | Banana | cytosol, golgi | 26.71 | 26.62 |
| Os08t0428100-00 | Rice | mitochondrion | 24.43 | 25.95 |
| Solyc04g024940.2.1 | Tomato | cytosol, plastid | 30.62 | 19.58 |
| Solyc02g068000.2.1 | Tomato | cytosol | 20.2 | 17.51 |
| Solyc02g093840.2.1 | Tomato | cytosol | 26.38 | 16.56 |
Protein Annotations
| Gene3D:1.20.1280.50 | Gene3D:3.80.10.10 | MapMan:35.1 | InterPro:4Fe4S_Fe_S_CS | ncoils:Coil | InterPro:F-box-like_dom_sf |
| InterPro:F-box_dom | GO:GO:0000003 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0007275 |
| GO:GO:0008150 | GO:GO:0009790 | GO:GO:0009791 | GO:GO:0009793 | InterPro:IPR001810 | InterPro:IPR032675 |
| UniProt:K4ASB2 | InterPro:LRR_dom_sf | PFAM:PF00646 | ScanProsite:PS00198 | PFscan:PS50181 | PANTHER:PTHR45375 |
| SMART:SM00256 | SUPFAM:SSF52047 | SUPFAM:SSF81383 | EnsemblPlantsGene:Solyc01g005450.2 | EnsemblPlants:Solyc01g005450.2.1 | UniParc:UPI0002761ACF |
| SEG:seg | : | : | : | : | : |
Description
F-box protein SKIP28 [Source:Projected from Arabidopsis thaliana (AT2G01620) UniProtKB/Swiss-Prot;Acc:Q9ZU90]
Coordinates
chr1:-:314777..317493
Molecular Weight (calculated)
35110.9 Da
IEP (calculated)
7.754
GRAVY (calculated)
-0.131
Length
307 amino acids
Sequence
(BLAST)
(BLAST)
001: MTQTSSQLSA PHEAMFLILP YLPLFELLSM SQVCKSFRDA LKHDILPWLN IVVEKPINTR FSDEFLVKIM SKAKGRLNVV ALRNCYKITD EGLLQVIASN
101: PFINKLYLQG CTSLTIEGVI GAIKLLTKPN HKLKNLAISG IYNVKIEDFQ TLCYLMGINQ MQMNQITKNY YHMRHELYAF KQESQPSIDV DICPKCGEIR
201: EVFDCPRDSC KRRMQQQQQQ QKQLLIECRG CFLCVPRCEE CGVCTKDEEL GEAACVDILC LNCWLHLPKC NFCNKAYCNQ HAYQQHVGSS LGFLCSECSF
301: HATQSSH
101: PFINKLYLQG CTSLTIEGVI GAIKLLTKPN HKLKNLAISG IYNVKIEDFQ TLCYLMGINQ MQMNQITKNY YHMRHELYAF KQESQPSIDV DICPKCGEIR
201: EVFDCPRDSC KRRMQQQQQQ QKQLLIECRG CFLCVPRCEE CGVCTKDEEL GEAACVDILC LNCWLHLPKC NFCNKAYCNQ HAYQQHVGSS LGFLCSECSF
301: HATQSSH
001: MKTELEEEEE EEWRSVHEVL LIVLPYLHSL FELLSMIRVS RSLRDAIRDE TALWTKLVIE PPLSSRLTDD ILSEFSSKSA GKLKTLILRQ CLMVTNKGLR
101: RVVDANPLIT KIIVPGCSGL TPEGIMECVE SLSKNNHKLE TLHINGVNGF TKQHLSALYT YLSSEGTIDL EVCPKCDEVR MIPSCSRESC NQKQRKCRGC
201: WLCIPRCAEC AVCLVGSDTE SQEAACGNDD VLCLECWLVL PKCRFCNKPY CTNHSSRRHE IAITDAASRP SFECEACYYR AGTNPYEVDY QI
101: RVVDANPLIT KIIVPGCSGL TPEGIMECVE SLSKNNHKLE TLHINGVNGF TKQHLSALYT YLSSEGTIDL EVCPKCDEVR MIPSCSRESC NQKQRKCRGC
201: WLCIPRCAEC AVCLVGSDTE SQEAACGNDD VLCLECWLVL PKCRFCNKPY CTNHSSRRHE IAITDAASRP SFECEACYYR AGTNPYEVDY QI
Arabidopsis Description
SKIP28F-box protein SKIP28 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZU90]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.