Factsheet for Solyc02g093840.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g059010.2.1
Solyc10g078950.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G27290.1	Solyc03g059010.2.1	AT3G58560.1	21798944
AT3G27290.1	Solyc10g078950.1.1	AT3G58560.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400052249	Potato	cytosol	78.12	77.8
VIT_14s0171g00480.t01	Wine grape	cytosol	40.29	41.04
Solyc02g068000.2.1	Tomato	cytosol	28.83	39.83
Solyc04g024940.2.1	Tomato	cytosol, plastid	32.11	32.71
KRG94336	Soybean	cytosol	32.72	32.65
CDY20054	Canola	cytosol	24.95	31.94
CDY00160	Canola	cytosol	23.93	31.62
AT3G27290.1	Thale cress	cytosol	24.54	31.41
KRH57627	Soybean	cytosol	31.7	31.31
Bra039085.1-P	Field mustard	cytosol	23.72	30.85
Solyc01g005450.2.1	Tomato	extracellular	16.56	26.38

Protein Annotations

Gene3D:3.80.10.10	MapMan:35.1	InterPro:4Fe4S_Fe-S-bd	InterPro:4Fe4S_Fe_S_CS	InterPro:F-box-like_dom_sf	InterPro:F-box_dom
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810	InterPro:IPR017896	InterPro:IPR032675
UniProt:K4BDI0	InterPro:LRR_dom_sf	PFAM:PF12937	ScanProsite:PS00198	PFscan:PS50181	PFscan:PS51379
PANTHER:PTHR44838	PANTHER:PTHR44838:SF1	SUPFAM:SSF81383	EnsemblPlantsGene:Solyc02g093840.2	EnsemblPlants:Solyc02g093840.2.1	UniParc:UPI00027688C3

Description

No Description!

Coordinates

chr2:+:54543905..54546623

Molecular Weight (calculated)

55547.8 Da

IEP (calculated)

4.655

GRAVY (calculated)

-0.406

Length

489 amino acids

Sequence
(BLAST)

001: MSLNREERIL AGTKLDNSYF DKEYPNEKLD RFGDFWGLKR EIDKVHDHKS EKIEMVSDDI SDFWDLNCEK GSFPDHKDEN SKMGSDDIVD LLPQDPFDMD
101: ISTKITGWLE GINKDFGLKD LGFCTDEIEV DVQLYAEFNI VVKGAIRVHH DVGENSYVSE IDLGEGLPMD VEIEDIMNSC YWAFRDAAQE DQSGMNDHCD
201: ADGGSPSDAL YLSLNYLGLR DLLSVEGVCK ALRDVVRSDP LLWRDIQVDY PLSNKITDDV LIKLTDRAQG HLDSVCLMHC PRITDSSLNC VLERNSSLKK
301: LSVPGCVRLT ADGILRNLKV LRSAGKPRLK YLGVNGLFGM THHHFEEFKV LLGVDSSKLP STRKPRFLQG GQLSVSSDDD YAIDIEICPI CQQLRVVYDC
401: PSESCEKKKS TAQSCRACTI CIKRCINCGR CLNNCEYEEL FSFDNLCLDC CRDCYKEFLD HQERQERITV PLENPVPHKQ TSCHFFFCG

Best Arabidopsis Sequence Match ( AT3G26000.1 )
(BLAST)

001: MALNFSHRPF SSHLSEEPMM IANGNWCSSF DNGRKNTGGD ASSVDILDVL PSDPFGMDIN NTFTAITGWL EDLEDDYNNQ YGRRRRDDIW IGDGNRQQLF
101: AGLSFFWNNA MQFQSSGYSY GSESLFGGAF DGSLFSTCKF PESSGENNGF GGALDGDGSC HGAFISASSV DEVLSHENAR NGEVVGSSDR CNNGEEDAYV
201: HPAIGFCLYH LRGKDLLSVS MVCKSLHTTV CDDTLLWKHI HICRPLNEKI TEEALLHLTE RAQGTMQCLR IVDCCRITDD CLKRVVARNR QVVKIGVPGC
301: TRITIDGILS VLRDLKSAGK LQVKHLQLRG LFGVTKDHYD ELIDLLNIDN KVKQTIQKPR FYHRGEACVS CDDDRALDIE MCPKCQNFKL VYDCPAEDCK
401: GKKKGSEECR ACSLCIQRCY HCGRCIIDTE YEEMFCLELL CAVCSKPTPK LTL

Arabidopsis Description

SKIP14F-box protein SKIP14 [Source:UniProtKB/Swiss-Prot;Acc:Q9LU91]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.