Factsheet for Solyc03g059010.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g112230.2.1
Solyc04g053090.1.1
Solyc04g053100.1.1
Solyc06g071770.2.1
Solyc08g006950.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G58560.1	Solyc04g053090.1.1	AT4G17950.1	21798944
AT3G58560.1	Solyc04g053100.1.1	AT4G17950.1	21798944
AT3G58560.1	Solyc08g006950.2.1	AT4G17950.1	21798944
AT3G58560.1	Solyc03g112230.2.1	AT4G24690.1	21798944
AT3G58560.1	Solyc06g071770.2.1	AT4G24690.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_08s0007g07020.t01	Wine grape	cytosol	81.48	80.27
Solyc10g078950.1.1	Tomato	cytosol	75.42	79.86
KRH71803	Soybean	cytosol	24.24	78.26
KRH68083	Soybean	cytosol	77.44	76.41
KRG96349	Soybean	cytosol	76.94	76.17
KRH38033	Soybean	cytosol	76.77	76.0
KRH71804	Soybean	cytosol	47.98	74.41
AT3G58560.1	Thale cress	cytosol	73.4	72.43
Bra014566.1-P	Field mustard	cytosol	72.39	71.67
CDX88992	Canola	mitochondrion	66.83	71.66
CDX67751	Canola	cytosol	71.21	71.45
Bra003342.1-P	Field mustard	cytosol	71.21	71.45
CDX67753	Canola	cytosol	72.05	71.33
CDY00572	Canola	cytosol	72.05	71.33
Bra003344.1-P	Field mustard	cytosol	68.69	71.2
CDX98303	Canola	cytosol	70.54	70.78
GSMUA_Achr4P17200_001	Banana	cytosol	69.53	70.72
GSMUA_Achr9P25420_001	Banana	cytosol	69.36	70.67
AT3G58580.1	Thale cress	cytosol	71.72	70.65
Os03t0166800-01	Rice	cytosol	72.05	70.51
Os10t0412100-01	Rice	cytosol	71.72	70.41
Bra007403.1-P	Field mustard	cytosol	70.54	70.18
OQU91798	Sorghum	cytosol	71.55	70.13
Zm00001d032979_P003	Maize	cytosol	71.38	70.08
CDY49233	Canola	cytosol	70.71	70.0
CDX71943	Canola	cytosol	70.88	69.93
TraesCS1D01G134400.1	Wheat	cytosol	71.04	69.75
TraesCS1A01G137900.1	Wheat	cytosol	71.04	69.75
Zm00001d014187_P011	Maize	cytosol	70.71	69.65
HORVU1Hr1G035390.1	Barley	cytosol	70.88	69.59
TraesCS1B01G153300.2	Wheat	cytosol	70.88	69.59
GSMUA_Achr9P11040_001	Banana	cytosol, peroxisome, vacuole	67.0	68.98
KXG40109	Sorghum	mitochondrion	70.54	67.58
CDX98305	Canola	plastid	71.21	66.41
Zm00001d027811_P001	Maize	mitochondrion	70.2	64.75
GSMUA_Achr6P29710_001	Banana	endoplasmic reticulum, golgi	63.3	51.51
Solyc08g075010.2.1	Tomato	mitochondrion	16.84	25.71
Solyc03g119570.1.1	Tomato	nucleus	17.17	24.4
Solyc03g119710.2.1	Tomato	plastid	17.0	23.27
Solyc08g067420.2.1	Tomato	plastid	21.38	14.55

Protein Annotations

EnsemblPlants:Solyc03g059010.2.1	EnsemblPlantsGene:Solyc03g059010.2	Gene3D:3.60.10.10	InterPro:Endo/exonu/phosph_ase_sf	InterPro:Endo/exonuclease/phosphatase	InterPro:IPR036691
InterPro:Zfn-C6H2	PANTHER:PTHR12121	PANTHER:PTHR12121:SF29	PFAM:PF03372	PFAM:PF15801	SEG:seg
SUPFAM:SSF56219	UniParc:UPI0002768EAF	UniProt:K4BGU8	MapMan:16.8.2.1.2.1	:	:

Description

No Description!

Coordinates

chr3:-:27268959..27279530

Molecular Weight (calculated)

65725.5 Da

IEP (calculated)

7.709

GRAVY (calculated)

-0.161

Length

594 amino acids

Sequence
(BLAST)

001: MLTVVRVHLP SDIPIVGCEL TPYVLLRLPD SLLISDDIPE SAPVYGCFLR YKWYRIQSDK HVAMCSIHPS EQATLQCLAC VKAKIPVAKS YHCSPKCFSD
101: AWQHHRLLHE RAASAVNTNG NEENTGSGVN TSLTSSQSSG SLTNGTTPFP VVVTQRSGGE TWFEVGHSKT YTPSADDIGH TLKFECAIIN AVTKSTVGNA
201: STMMSRVIPA PSPTPRRLIS VSGVDIPLHL DLDSRLSSSG TFTVLSYNIL SDAYATNELY SYCPSWALAW TYRRQNLLRE IAGYRADIVC LQEVQSDHFE
301: EFFAPELDKH GYQALFKRKT TEVISGNINT VDGCATFFRR DRFTHVKKYE VEFNKAAQSL TEALVPSAQK KTALNRLLKD NIALIVVLEA KFNSQGVDNT
401: GKRQLVCVAN THVNVHQELK DVRLWQVHTL LKGLEKIAAT ADIPMLLCGD FNSAPGSAPH ALVSMGKVDP MHPELAVDPF GILRPATKLT HHLPLVSAYT
501: SFARVPVVPG LAQKRRKLDP STNEPLFTSC TRDHFGTLDY IFYSADSVTV ESLLELLDEE SLRKDTALPS PEWSSDHIAL LAGFRCKPRT RRLA

Best Arabidopsis Sequence Match ( AT3G58560.1 )
(BLAST)

001: MLSVIRVHLP SEIPIVGCEL TPYVLLRRPD KTPSTDDVPE SAPLEGHFLK YRWFRVQSDK KVAICSVHPS ETATLQCLGC LKSKVPVAKS YHCSTKCFSD
101: AWQHHRVLHE RAASAATEGN DEEELPRLNS SGSGSGVLST SVSLTNGSSS VYPSAITQKT GAGGETLVEV GRSKTYTPMA DDICHVLKFE CVVVNAETKQ
201: NVGLSCTILT SRVIPAPSPS PRRLISISGT DVTGHLDSNG RPLSMGTFTV LSYNILSDTY ASSDIYSYCP TWALAWTYRR QNLLREIVKY RADIVCLQEV
301: QNDHFEEFFL PELDKHGYQG LFKRKTNEVF IGNTNTIDGC ATFFRRDRFS HVKKYEVEFN KAAQSLTEAI IPVSQKKNAL NRLVKDNVAL IVVLEAKFGS
401: QAADNPGKRQ LLCVANTHVN VPHELKDVKL WQVHTLLKGL EKIAASADIP MLVCGDFNTV PASAPHTLLA VGKVDPLHPD LMVDPLGILR PHSKLTHQLP
501: LVSAYSQFAK MGGNVITEQQ RRRLDPASSE PLFTNCTRDF IGTLDYIFYT ADTLTVESLL ELLDEESLRK DTALPSPEWS SDHIALLAEF RCMPRARRNN
601: IL

Arabidopsis Description

CCR4-1Carbon catabolite repressor protein 4 homolog 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8W0Z9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.