CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra007403.1-P	Field mustard	cytosol	99.33	99.83
CDX71943	Canola	cytosol	99.0	98.67
CDY00572	Canola	cytosol	90.83	90.83
CDX67753	Canola	cytosol	90.5	90.5
CDX88992	Canola	mitochondrion	83.33	90.25
AT3G58580.1	Thale cress	cytosol	88.83	88.39
CDX98305	Canola	plastid	89.5	84.3
KRH71803	Soybean	cytosol	25.0	81.52
CDX98303	Canola	cytosol	75.67	76.69
CDX67751	Canola	cytosol	75.33	76.35
VIT_08s0007g07020.t01	Wine grape	cytosol	75.67	75.29
PGSC0003DMT400029795	Potato	cytosol	75.5	74.88
Solyc10g078950.1.1	Tomato	cytosol	69.17	73.97
KRH38033	Soybean	cytosol	73.5	73.5
KRG96349	Soybean	cytosol	73.0	73.0
KRH68083	Soybean	cytosol	72.5	72.26
GSMUA_Achr9P25420_001	Banana	cytosol	69.0	71.01
GSMUA_Achr4P17200_001	Banana	cytosol	69.0	70.89
Solyc03g059010.2.1	Tomato	cytosol, nucleus, plastid	70.0	70.71
TraesCS1A01G137900.1	Wheat	cytosol	71.0	70.41
TraesCS1B01G153300.2	Wheat	cytosol	71.0	70.41
TraesCS1D01G134400.1	Wheat	cytosol	71.0	70.41
Os10t0412100-01	Rice	cytosol	70.83	70.25
OQU91798	Sorghum	cytosol	70.83	70.13
HORVU1Hr1G035390.1	Barley	cytosol	70.67	70.08
Zm00001d032979_P003	Maize	cytosol	70.5	69.92
Os03t0166800-01	Rice	cytosol	70.5	69.69
KRH71804	Soybean	cytosol	44.33	69.45
Zm00001d014187_P011	Maize	cytosol	69.33	68.99
GSMUA_Achr9P11040_001	Banana	cytosol, peroxisome, vacuole	66.33	68.98
KXG40109	Sorghum	mitochondrion	69.5	67.26
Zm00001d027811_P001	Maize	mitochondrion	69.0	64.29
GSMUA_Achr6P29710_001	Banana	endoplasmic reticulum, golgi	62.5	51.37
CDY12304	Canola	plastid	17.67	26.5
CDY12415	Canola	plastid	16.0	25.81
CDY27147	Canola	plastid	16.5	25.65
CDY24484	Canola	mitochondrion	18.5	24.67
CDX92241	Canola	mitochondrion, nucleus, plastid	18.5	24.67
CDY62302	Canola	mitochondrion, plastid	17.67	24.65
CDX96494	Canola	plastid	18.0	24.49
CDX73024	Canola	plastid	18.17	24.01
CDX97099	Canola	plastid	20.0	15.96
CDX69764	Canola	mitochondrion, plastid	19.67	15.61
CDX97100	Canola	plastid	0.17	0.14

Protein Annotations

EnsemblPlants:CDY49233	EnsemblPlantsGene:GSBRNA2T00092623001	Gene3D:3.60.10.10	InterPro:Endo/exonu/phosph_ase_sf	InterPro:Endo/exonuclease/phosphatase	InterPro:IPR036691
InterPro:Zfn-C6H2	PANTHER:PTHR12121	PANTHER:PTHR12121:SF29	PFAM:PF03372	PFAM:PF15801	ProteinID:CDY49233
ProteinID:CDY49233.1	SEG:seg	SUPFAM:SSF56219	UniParc:UPI0004EEB780	UniProt:A0A078IJH4	MapMan:16.8.2.1.2.1

Description

BnaA09g55120DBnaA09g55120D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IJH4]

Coordinates

chrLK032820:-:3625..6904

Molecular Weight (calculated)

66726.5 Da

IEP (calculated)

7.422

GRAVY (calculated)

-0.287

Length

600 amino acids

Sequence
(BLAST)

001: MLSVIRVHLP SEIPIVGCEL TPYVLVRRPD KSAATEDVPE SSPLEGYFLR YRWFRVQSDK KVTICSVHPT EQATLQCVFC SKRPALVSKS YHCSPKCFTD
101: AWQHHKTLHE RAAAENGNNE EDNNNNNNDL SRANSAASGV LASTLSSLNG PPTPFYPSSI AQKNGGETLV EVGGCKTYTP TADDIGYVLK FECVVAVAES
201: KQSVGHPSTI MTSRVIPAPS PRPRRLIPVN GADVVGGHLD QDGRIQSAGS FTVLSYNILS DTSASSELYS YCPTWALSWP YRRQNLLREI VAYRADVVCL
301: QEVQSDHFHE IFAPELDKHG YQALYKRKTN EVLSGSTSAV DGCATFFRRD RFAHVKKYDV EFNKAAQSLT EAIIPPAQKR SALNRLVKDN IALIVVLEAK
401: FGNHQPTDGK RQLICVANTH VNVQQELKDV KLWQVHTLLK GLEKIAASAD IPMLVCGDFN TLPGSAPHSL LVYGKVDPQH PDLLVDPLGI LRPQTKLTHQ
501: LPLVSAYSSF VRSVMGIGLE QHRRKMDLNT NEPLFTNCTR DFIGTHDYIF YTADTLMVES LLELLDEDGL RKDTALPSPE WSSSHIALLA EFRCMPRTRR

Best Arabidopsis Sequence Match ( AT3G58580.1 )
(BLAST)

001: MLSVIRVHLP SEIPIVGCEL TPYVLVRRPD KNSTTDDVPE SAPLEGYFLR YRWYRVQSDK KVTICSVHPT EQATLQCVFC SKRRSLVPKS YHCSPKCFTD
101: AWQHHRTLHE RAAAENNANE DDDLNRNNSA GSGSLAGSLS GSMSNLSIAN NGPAPFYPSN ITQKNGGETL VEVGGCKTYT PTADDISHVL KFECVVANAE
201: TKQIVGHPST ILTSRVIPAP SPSPRKLIPV NGADGMGHLD QDARIQSAGS FTVLSYNILS DTSASSDLYS YCPPWALSWP YRRQNLLREI VGYRADVVCL
301: QEVQSDHFHE IFAPELDKHG YQALYKRKTN EVLSGSTSAI DGCATFFRRD RFSHVKKYDV EFNKAAQSLT DALIPQAQKR TALNRLVKDN IALIVVLEAK
401: FGNQPTDPSG KRQLICVANT HVNVQQDLKD VKLWQVHTLL KGLEKIAASA DIPMLVCGDF NTLPGSAPHT LLVMGKVDPM HPDLAVDPLN ILRPHTKLTH
501: QLPLVSAYSS FVRKGIMGLG LEQHRRRIDL NTNEPLFTNC TRDFIGTHDY IFYTADTLMV ESLLELLDED GLRKDTALPS PEWSSNHIAL LAEFRCTPRT
601: RRG

Arabidopsis Description

CCR4-2Carbon catabolite repressor protein 4 homolog 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9M2F8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.