CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 3
mitochondrion 4
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra023195.1-P	Field mustard	nucleus	83.95	99.45
CDY12304	Canola	plastid	88.84	95.5
CDY12415	Canola	plastid	74.65	86.29
CDY27147	Canola	plastid	76.98	85.75
AT1G31500.7	Thale cress	mitochondrion	77.44	78.91
VIT_02s0087g00390.t01	Wine grape	mitochondrion	55.58	60.81
PGSC0003DMT400040652	Potato	cytosol, plastid	50.7	59.89
KRH39729	Soybean	plastid	53.95	59.34
Solyc08g075010.2.1	Tomato	mitochondrion	50.93	56.3
KRH76418	Soybean	nucleus	37.91	56.21
GSMUA_AchrUn_...	Banana	cytosol	40.23	54.57
Os05t0389500-02	Rice	mitochondrion	48.37	53.47
EES19469	Sorghum	plastid	48.6	53.18
TraesCS1D01G243100.1	Wheat	mitochondrion	48.37	52.53
TraesCS1B01G254600.1	Wheat	mitochondrion	48.37	52.53
TraesCS1A01G243100.1	Wheat	mitochondrion	48.37	52.53
Zm00001d038091_P006	Maize	plastid	48.84	51.09
CDY24484	Canola	mitochondrion	21.4	20.44
CDX92241	Canola	mitochondrion, nucleus, plastid	21.4	20.44
CDX96494	Canola	plastid	20.23	19.73
CDX98303	Canola	cytosol	26.51	19.26
CDX73024	Canola	plastid	20.23	19.16
CDX67751	Canola	cytosol	26.05	18.92
CDX88992	Canola	mitochondrion	23.95	18.59
CDX67753	Canola	cytosol	24.88	17.83
CDY49233	Canola	cytosol	24.65	17.67
CDY00572	Canola	cytosol	24.65	17.67
CDX71943	Canola	cytosol	24.65	17.61
CDX98305	Canola	plastid	25.35	17.11
CDX69764	Canola	mitochondrion, plastid	21.4	12.17
CDX97099	Canola	plastid	21.16	12.1
CDX97100	Canola	plastid	0.0	0.0

Protein Annotations

EnsemblPlants:CDY62302	EnsemblPlantsGene:GSBRNA2T00036150001	Gene3D:3.60.10.10	InterPro:Endo/exonu/phosph_ase_sf	InterPro:Endo/exonuclease/phosphatase	InterPro:IPR036691
PANTHER:PTHR12121	PANTHER:PTHR12121:SF42	PFAM:PF03372	ProteinID:CDY62302	ProteinID:CDY62302.1	SEG:seg
SUPFAM:SSF56219	TMHMM:TMhelix	UniParc:UPI0004EDD748	UniProt:A0A078J6W0	MapMan:35.1	:

Description

BnaA09g54220DBnaA09g54220D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J6W0]

Coordinates

chrLK034128:+:10322..14987

Molecular Weight (calculated)

49075.7 Da

IEP (calculated)

8.094

GRAVY (calculated)

-0.336

Length

430 amino acids

Sequence
(BLAST)

001: MNSYRTFRIT RFFNRATRGL YFVLFFVYIF KKFMFKTTTT LLHLPPPILP SLTTTRCGVC RKIVSRRMST NPPMQPKVRR FESVEEADDM HSISKSDGIR
101: FRLVSYNILA QVYVKSSLLP HSPPACLKWK ARSHAILGVL KKLEADFFCL QEVDEYDSFY RKNMDSLGYS GIYIQRTGQR KRDGCAIFYK PSCAELVAKE
201: RIEYNDLLDS VKADSVQETE TSNESKGDEH AKDSRKDSRD LNDPLVRLKR DCVGIMAAFK INKPFHHVVI VANTHLYWDP ELADVKLAQA KYLLSRLDQF
301: RTLISNEFEC TPSLLLSGDF NSIPGDKVYS YLVSGNGKPA EAIEEEVEAP VPLCSAYEVT RGEPKFTNCT PGFTNTLDYI FFSPSDFIKP VSILQLPEPE
401: SPDVVGFLPN NHHPSDHLPI GAEFEISRNR

Best Arabidopsis Sequence Match ( AT1G31500.1 )
(BLAST)

001: MFSSTTLHHL PRPNLLLPSS RVCRKVISRR MSTNPAIEPK VRKFESVEGV DIGSRNKSDG IRFRLVSYNI LAQVYVKSAL LPHSPPACLK WKARSHAILS
101: VLKNLQADFF CLQEVDEYDS FYRNNMDSLG YSGIYIQRTG QRKRDGCAIF YKPSCAELVT KERIEYNDLV DSIKADSVSC SEQKIETSNE GKDSRKDSRD
201: LNDPLVRLKR DCVGIMAAFR INKPFQHIVI VANTHLYWDP ELADVKLAQA KYLLSRLAQF KTLISDEFEC TPSLLLAGDF NSIPGDMVYS YLVSGNAKPT
301: ETIEEEEAPV PLSSVYEVTR GEPKFTNCTP GFTNTLDYIF ISPSDFIKPV SILQLPEPDS PDVVGFLPNH HHPSDHLPIG AEFEIRRE

Arabidopsis Description

DNAse I-like superfamily protein [Source:TAIR;Acc:AT1G31500]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.