CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 1
vacuole 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra038426.1-P	Field mustard	plastid	96.77	93.75
CDY27147	Canola	plastid	96.77	93.26
CDY12304	Canola	plastid	86.83	80.75
AT1G31500.7	Thale cress	mitochondrion	84.95	74.88
CDY62302	Canola	mitochondrion, plastid	86.29	74.65
VIT_02s0087g00390.t01	Wine grape	mitochondrion	65.05	61.58
PGSC0003DMT400040652	Potato	cytosol, plastid	56.99	58.24
KRH39729	Soybean	plastid	60.48	57.54
Solyc08g075010.2.1	Tomato	mitochondrion	56.72	54.24
KRH76418	Soybean	nucleus	42.2	54.14
GSMUA_AchrUn_...	Banana	cytosol	45.7	53.63
Os05t0389500-02	Rice	mitochondrion	52.42	50.13
EES19469	Sorghum	plastid	52.42	49.62
TraesCS1A01G243100.1	Wheat	mitochondrion	52.42	49.24
TraesCS1D01G243100.1	Wheat	mitochondrion	52.15	48.99
TraesCS1B01G254600.1	Wheat	mitochondrion	52.15	48.99
Zm00001d038091_P006	Maize	plastid	52.69	47.69
CDY24484	Canola	mitochondrion	23.66	19.56
CDX92241	Canola	mitochondrion, nucleus, plastid	23.66	19.56
CDX96494	Canola	plastid	22.85	19.27
CDX73024	Canola	plastid	22.85	18.72
CDX98303	Canola	cytosol	27.96	17.57
CDX67751	Canola	cytosol	27.42	17.23
CDX88992	Canola	mitochondrion	25.27	16.97
CDX67753	Canola	cytosol	26.34	16.33
CDY00572	Canola	cytosol	26.08	16.17
CDY49233	Canola	cytosol	25.81	16.0
CDX71943	Canola	cytosol	25.81	15.95
CDX98305	Canola	plastid	26.34	15.38
CDX69764	Canola	mitochondrion, plastid	23.66	11.64
CDX97099	Canola	plastid	23.39	11.57
CDX97100	Canola	plastid	0.0	0.0

Protein Annotations

EnsemblPlants:CDY12415	EnsemblPlantsGene:GSBRNA2T00061659001	Gene3D:3.60.10.10	InterPro:Endo/exonu/phosph_ase_sf	InterPro:Endo/exonuclease/phosphatase	InterPro:IPR036691
PANTHER:PTHR12121	PANTHER:PTHR12121:SF42	PFAM:PF03372	ProteinID:CDY12415	ProteinID:CDY12415.1	SEG:seg
SUPFAM:SSF56219	UniParc:UPI0004EF4AAF	UniProt:A0A078FDF2	MapMan:35.1	:	:

Description

BnaC08g09040DBnaC08g09040D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FDF2]

Coordinates

chrLK032022:+:85061..93211

Molecular Weight (calculated)

42070.4 Da

IEP (calculated)

6.019

GRAVY (calculated)

-0.336

Length

372 amino acids

Sequence
(BLAST)

001: MFNNTLLLHL PPPIPPSLAS CRASRKILSK RMTTAMDPKV GKFESVEGAD LNSISKPDGI RFRLVSYNIL AQVYVKSSLF PHSPPACLKW KARSHAILSV
101: LKKLQADFFC LQEVDEYDSF YRKNMESLGY SGIYIQRTGQ RKRDGCAIFF KPSCAELVTK ERIEYNDLLD EQKIETSNEA KGDEKEAKEH SGKDSRDLND
201: PQVRLKRDCV GIMAAFRINK PFHHMVIVAN THLYWDPELA DVKLAQAKYL LSRLAQFKTL ISDEFECTPS LLLAGDFNSI PGDMTIEEEE VAPIPMCSVY
301: EVTRGEPKFT NCTPGFTNTL DYIFFSPSDF IKPVSILQLP EPESPDVVGF LPNDHHPSDH LPIGAEFEIS RE

Best Arabidopsis Sequence Match ( AT1G31500.1 )
(BLAST)

001: MFSSTTLHHL PRPNLLLPSS RVCRKVISRR MSTNPAIEPK VRKFESVEGV DIGSRNKSDG IRFRLVSYNI LAQVYVKSAL LPHSPPACLK WKARSHAILS
101: VLKNLQADFF CLQEVDEYDS FYRNNMDSLG YSGIYIQRTG QRKRDGCAIF YKPSCAELVT KERIEYNDLV DSIKADSVSC SEQKIETSNE GKDSRKDSRD
201: LNDPLVRLKR DCVGIMAAFR INKPFQHIVI VANTHLYWDP ELADVKLAQA KYLLSRLAQF KTLISDEFEC TPSLLLAGDF NSIPGDMVYS YLVSGNAKPT
301: ETIEEEEAPV PLSSVYEVTR GEPKFTNCTP GFTNTLDYIF ISPSDFIKPV SILQLPEPDS PDVVGFLPNH HHPSDHLPIG AEFEIRRE

Arabidopsis Description

DNAse I-like superfamily protein [Source:TAIR;Acc:AT1G31500]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.