CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus

Predictor Summary:

plastid 4
mitochondrion 3
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY24484	Canola	mitochondrion	93.78	93.78
Bra022326.1-P	Field mustard	mitochondrion, plastid	95.11	92.84
AT3G18500.3	Thale cress	nucleus	81.78	81.96
VIT_17s0000g04030.t01	Wine grape	plastid	56.0	57.14
Solyc03g119710.2.1	Tomato	plastid	53.11	55.07
KRH60320	Soybean	plastid	52.0	53.79
KRH41616	Soybean	cytosol	43.11	52.86
GSMUA_Achr7P12580_001	Banana	mitochondrion	34.89	48.76
Zm00001d045673_P003	Maize	plastid	42.67	43.34
EER89572	Sorghum	plastid	43.56	41.88
TraesCS7B01G114200.1	Wheat	plastid	40.89	41.26
TraesCS7A01G206900.2	Wheat	plastid	40.89	41.16
TraesCS7D01G209700.2	Wheat	plastid	40.67	40.94
CDX96494	Canola	plastid	39.78	40.59
HORVU0Hr1G020140.2	Barley	mitochondrion, nucleus	40.44	39.57
Os06t0264900-00	Rice	plastid	26.67	39.22
CDX73024	Canola	plastid	39.56	39.21
HORVU7Hr1G042150.3	Barley	nucleus, plastid	41.33	37.96
CDY27147	Canola	plastid	20.44	23.83
CDY12415	Canola	plastid	19.56	23.66
CDY12304	Canola	plastid	20.67	23.25
CDX97099	Canola	plastid	38.44	23.01
CDX69764	Canola	mitochondrion, plastid	38.0	22.62
CDY62302	Canola	mitochondrion, plastid	20.44	21.4
CDX88992	Canola	mitochondrion	24.89	20.22
CDY00572	Canola	cytosol	25.33	19.0
CDX67753	Canola	cytosol	25.33	19.0
CDX67751	Canola	cytosol	24.89	18.92
CDX98303	Canola	cytosol	24.89	18.92
CDX71943	Canola	cytosol	24.89	18.6
CDY49233	Canola	cytosol	24.67	18.5
CDX98305	Canola	plastid	24.89	17.58
CDX97100	Canola	plastid	0.0	0.0

Protein Annotations

EnsemblPlants:CDX92241	EnsemblPlantsGene:GSBRNA2T00153956001	InterPro:Endo/exonu/phosph_ase_sf	InterPro:Endo/exonuclease/phosphatase	InterPro:IPR036691	PANTHER:PTHR12121
PANTHER:PTHR12121:SF51	PFAM:PF03372	ProteinID:CDX92241	ProteinID:CDX92241.1	SEG:seg	SUPFAM:SSF56219
UniParc:UPI0004EEF05E	MapMan:35.1	:	:	:	:

Description

BnaA05g21660D

Coordinates

chrLK031871:+:1023760..1026786

Molecular Weight (calculated)

50936.0 Da

IEP (calculated)

9.226

GRAVY (calculated)

-0.521

Length

450 amino acids

Sequence
(BLAST)

001: MRSVACSWSR PTGASRISFG GHLSSGFHRS HHLSSSLSFP SSGDASFLVS CSSTSGPSDH NDSSNRSYSR RWYNRLPRRR QADQMPTSRI ARDWIDSDTS
101: TVSEDSDRFT VVSYNILGDR NSSYHKDLYS NVSFPYLKWG YRKRLICEEL IRLRPDIICM QEVDKYFDLF SMMEKAGYAG SYKRRTGDNI DGCAMFWKAD
201: RFRVLERENI EFSQFGMRDN VAQLSVLELR KSKSRRLLVG NIHVLYNPSR GDVKLGQIRS LCSKAHLLSK KWGDIPIVLG GDYNSLPQSP LYNFLASSEL
301: NIMKHDKREL SGQRNRLPNQ VLETGSKPSN TITSISRCLS SSWTNEEIRL ATGQENSYWA VHPLKLNSSY ASVKGSTNTR DSIGEPLATS YHSKFLGTVD
401: YLWYSDGIAP ARVLDTLPID VLCRTRGLPC QELGSDHLAL VSEFFFEPNG

Best Arabidopsis Sequence Match ( AT3G18500.3 )
(BLAST)

001: MRCVNRVDCS WSRPSEAYRI LPSGGHLSSG FHQCPLSSLS FRSSFVCCSS STSGPSDSNP ESSSNRSYSR RWQNPLPRRQ HPDQIPSSQI ARDWIDSDTT
101: PVSQALERFT VVSYNILGDG NSSYHRELYS NVSVPYLKWG YRKRLICEEL IRLNPDIISM QEVDKYFDLF SMMEKAGYAG SYKRRTGDNV DGCAMFWKAD
201: RFGVLERENI EFSQFGMRDN VAQLAVLELR KSNKSRKILL GNIHVLYNPN QGDVKLGQVR SLCSKAHLLS KKWGDIPIVL CGDFNSTPKS PLYNFLASSE
301: LNVMEHDKKE LSGQKNCRPT KVLETGSKSS NTITFRSFCS SWTKEEIRVA TGQENSYWAA HPLKLNSSYA SVKGSANTRD SVGEPLATSY HSKFLGTVDY
401: LWYSDGLLPA RVLDTLPIDV LCKTKGLPCQ ELGSDHLALV SEFVFEPDG

Arabidopsis Description

DNAse I-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4J8R6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.