CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra003344.1-P	Field mustard	cytosol	95.17	99.65
CDY00572	Canola	cytosol	95.17	95.17
CDX88992	Canola	mitochondrion	86.83	94.04
CDX98305	Canola	plastid	98.0	92.31
AT3G58580.1	Thale cress	cytosol	91.5	91.04
CDX71943	Canola	cytosol	91.33	91.03
CDY49233	Canola	cytosol	90.5	90.5
KRH71803	Soybean	cytosol	25.33	82.61
CDX67751	Canola	cytosol	76.67	77.7
CDX98303	Canola	cytosol	76.5	77.53
PGSC0003DMT400029795	Potato	cytosol	77.67	77.02
VIT_08s0007g07020.t01	Wine grape	cytosol	77.0	76.62
KRH38033	Soybean	cytosol	76.17	76.17
KRG96349	Soybean	cytosol	76.0	76.0
Solyc10g078950.1.1	Tomato	cytosol	71.0	75.94
KRH68083	Soybean	cytosol	75.67	75.42
KRH71804	Soybean	cytosol	46.5	72.85
Os10t0412100-01	Rice	cytosol	73.33	72.73
HORVU1Hr1G035390.1	Barley	cytosol	72.67	72.07
TraesCS1A01G137900.1	Wheat	cytosol	72.67	72.07
TraesCS1B01G153300.2	Wheat	cytosol	72.67	72.07
TraesCS1D01G134400.1	Wheat	cytosol	72.67	72.07
Solyc03g059010.2.1	Tomato	cytosol, nucleus, plastid	71.33	72.05
OQU91798	Sorghum	cytosol	72.17	71.45
Zm00001d032979_P003	Maize	cytosol	72.0	71.41
GSMUA_Achr9P25420_001	Banana	cytosol	69.33	71.36
GSMUA_Achr4P17200_001	Banana	cytosol	69.33	71.23
Os03t0166800-01	Rice	cytosol	71.33	70.51
Zm00001d014187_P011	Maize	cytosol	70.83	70.48
KXG40109	Sorghum	mitochondrion	72.0	69.68
GSMUA_Achr9P11040_001	Banana	cytosol, peroxisome, vacuole	67.0	69.67
Zm00001d027811_P001	Maize	mitochondrion	71.5	66.61
GSMUA_Achr6P29710_001	Banana	endoplasmic reticulum, golgi	62.33	51.23
CDY12304	Canola	plastid	17.83	26.75
CDY12415	Canola	plastid	16.33	26.34
CDX96494	Canola	plastid	19.17	26.08
CDY27147	Canola	plastid	16.67	25.91
CDX73024	Canola	plastid	19.33	25.55
CDY24484	Canola	mitochondrion	19.0	25.33
CDX92241	Canola	mitochondrion, nucleus, plastid	19.0	25.33
CDY62302	Canola	mitochondrion, plastid	17.83	24.88
CDX97099	Canola	plastid	20.5	16.36
CDX69764	Canola	mitochondrion, plastid	20.0	15.87
CDX97100	Canola	plastid	0.17	0.14

Protein Annotations

EnsemblPlants:CDX67753	EnsemblPlantsGene:GSBRNA2T00098941001	Gene3D:3.60.10.10	InterPro:Endo/exonu/phosph_ase_sf	InterPro:Endo/exonuclease/phosphatase	InterPro:IPR036691
InterPro:Zfn-C6H2	PANTHER:PTHR12121	PANTHER:PTHR12121:SF29	PFAM:PF03372	PFAM:PF15801	ProteinID:CDX67753
ProteinID:CDX67753.1	SEG:seg	SUPFAM:SSF56219	UniParc:UPI0004EE54F4	MapMan:16.8.2.1.2.1	:

Description

BnaA07g17930D

Coordinates

chrLK031787:-:2092912..2096261

Molecular Weight (calculated)

66617.6 Da

IEP (calculated)

7.560

GRAVY (calculated)

-0.241

Length

600 amino acids

Sequence
(BLAST)

001: MLSVIRVHLP SEIPIVGCEL TPYVLVRRPD KSAATDDVPE SAPLDGYFLR YRWYRVQSDK KVTICSVHPT QQATLQCVFC SKRKALVSKS YHCSPKCFVD
101: AWQHHKTLHE RAAAENGNEE DELVRFNSTG SGVLSGTLSG SMSNLNLAGN GPTPFYPSSI TQKSGGETLV EVGSCKTYTP TADDIGYVLK FECVVANAES
201: KQVVGHPSTI LTSRVIPAPS PSPRKLIPVN GADVMGHLDQ DGRIQSAGSF TVLSYNILSD TSASSDLYSY CPPWALSWSY RRHNLLREIV GYRADVVCLQ
301: EVQSDHFHEI FAPELDKHGY QALYKRKTNE VLSGSTSAID GCATFFRRDR FSHVKKYDVE FNKAAQSLTE AIIPPTQKRT ALNRLVKDNI ALIVVLEAKF
401: GNQPVDSSGK RQLICVANTH VNVQQELKDV KLWQVHTLLK GLEKIAASAD IPILVCGDFN TLPGSAPHTL LVMGKVDPLH PDLLVDPLGI LRPQTKLTHQ
501: LPLVSAYSSF VRPGTGLGLE QHRRRMDLNT NEPLFTNCTR DFIGTHDYIF YTADTLMVES LLELLDEDGL RKDTALPSPE WSSNHIALLA EFRCMPRTRR

Best Arabidopsis Sequence Match ( AT3G58580.1 )
(BLAST)

001: MLSVIRVHLP SEIPIVGCEL TPYVLVRRPD KNSTTDDVPE SAPLEGYFLR YRWYRVQSDK KVTICSVHPT EQATLQCVFC SKRRSLVPKS YHCSPKCFTD
101: AWQHHRTLHE RAAAENNANE DDDLNRNNSA GSGSLAGSLS GSMSNLSIAN NGPAPFYPSN ITQKNGGETL VEVGGCKTYT PTADDISHVL KFECVVANAE
201: TKQIVGHPST ILTSRVIPAP SPSPRKLIPV NGADGMGHLD QDARIQSAGS FTVLSYNILS DTSASSDLYS YCPPWALSWP YRRQNLLREI VGYRADVVCL
301: QEVQSDHFHE IFAPELDKHG YQALYKRKTN EVLSGSTSAI DGCATFFRRD RFSHVKKYDV EFNKAAQSLT DALIPQAQKR TALNRLVKDN IALIVVLEAK
401: FGNQPTDPSG KRQLICVANT HVNVQQDLKD VKLWQVHTLL KGLEKIAASA DIPMLVCGDF NTLPGSAPHT LLVMGKVDPM HPDLAVDPLN ILRPHTKLTH
501: QLPLVSAYSS FVRKGIMGLG LEQHRRRIDL NTNEPLFTNC TRDFIGTHDY IFYTADTLMV ESLLELLDED GLRKDTALPS PEWSSNHIAL LAEFRCTPRT
601: RRG

Arabidopsis Description

CCR4-2Carbon catabolite repressor protein 4 homolog 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9M2F8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.