CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX96494	Canola	plastid	93.83	96.6
Bra015956.1-P	Field mustard	plastid	94.71	94.51
AT1G73875.1	Thale cress	nucleus	77.31	77.31
KRH48475	Soybean	cytosol	40.31	63.76
KRH39200	Soybean	nucleus, plastid	53.74	57.01
Solyc03g119570.1.1	Tomato	nucleus	48.46	52.63
VIT_17s0000g03760.t01	Wine grape	nucleus	53.3	52.27
PGSC0003DMT400014627	Potato	nucleus	46.04	47.07
GSMUA_Achr6P09650_001	Banana	nucleus	45.59	43.86
CDX92241	Canola	mitochondrion, nucleus, plastid	39.21	39.56
CDY24484	Canola	mitochondrion	38.77	39.11
CDY12415	Canola	plastid	18.72	22.85
CDY27147	Canola	plastid	19.16	22.54
CDX97099	Canola	plastid	36.78	22.21
CDX69764	Canola	mitochondrion, plastid	36.56	21.96
CDY12304	Canola	plastid	19.16	21.75
CDY62302	Canola	mitochondrion, plastid	19.16	20.23
CDX88992	Canola	mitochondrion	24.01	19.68
CDX98303	Canola	cytosol	25.55	19.59
CDX67751	Canola	cytosol	25.33	19.43
CDX67753	Canola	cytosol	25.55	19.33
CDY00572	Canola	cytosol	24.45	18.5
CDX71943	Canola	cytosol	24.23	18.27
CDY49233	Canola	cytosol	24.01	18.17
CDX98305	Canola	plastid	25.33	18.05
CDX97100	Canola	plastid	0.0	0.0

Protein Annotations

EnsemblPlants:CDX73024	EnsemblPlantsGene:GSBRNA2T00103466001	Gene3D:3.60.10.10	InterPro:Endo/exonu/phosph_ase_sf	InterPro:Endo/exonuclease/phosphatase	InterPro:IPR036691
PANTHER:PTHR12121	PANTHER:PTHR12121:SF51	PFAM:PF03372	ProteinID:CDX73024	ProteinID:CDX73024.1	SEG:seg
SUPFAM:SSF56219	UniParc:UPI0004EE41FE	MapMan:35.1	:	:	:

Description

BnaC06g34720D

Coordinates

chrLK031797:+:1719762..1723261

Molecular Weight (calculated)

51568.3 Da

IEP (calculated)

9.593

GRAVY (calculated)

-0.563

Length

454 amino acids

Sequence
(BLAST)

001: MSSGGGYKPV NTARRTITTV SKRKRSSISE PVHRPHPPIA PGPIRKASKS SRRRRRIRKE RASSSVERQW VFSASNSRNL KDKLVLVSYN LLGVDNASNH
101: MDLYYNIPPQ HLEWSRRKHL ICKEISRYNA TILCLQASSD LYYYILYWMI NMDFACEVDR FDDLDGLLKN RGFQGVHKRR TGEASDGCSI FWKEKLFKLL
201: HHQEIEFDSF GLRNNVAQLC VLEMNCEDPE SKLRVQSSEQ TSTSPRRLVV GNIHVLFNPK RGDIKLGQVR LLLERAYKLS QEWGNIPVAI AGDLNSTPKS
301: AIYDFVASAD LDTQLHDRRQ ISGQSELDTK PSPFRNHYAV SVSQTNEWSQ EELQLATGGQ ATTHVRHQLK LNSAYAGVPG THRTRDQCGE PLATTCHSRF
401: QGTVDYIWHT KELVPVRVLE TLPTDVLRRT GGLPSEKWGS DHLAIACELG FVGE

Best Arabidopsis Sequence Match ( AT1G73875.1 )
(BLAST)

001: MSGYERKNTT ANSITITKRK RNSISEQSEN VYEKSNRKES ITLKPHRSFT PGFSQRDCKP VRHSKSSLRR RRRTKEKISS SVEREWVFSA NNFENLADKL
101: VLVSYNLLGV DNASNHMDLY YNVPRKHLEW SRRKHLICKE ISRYNASILC LQEVDRFDDL DVLLKNRGFR GVHKSRTGEA SDGCAIFWKE NLFELLDHQH
201: IEFDKFGMRN NVAQLCVLEM NCEEDPKSKL RVRSSDPRRL VVGNIHVLFN PKRGDIKLGQ VRLFLEKAYK LSQEWGNIPV AIAGDLNSTP QSAIYDFIAS
301: ADLDTQLHDR RQISGQTEVE PKERSFRNHY AFSASASISG SLLNEWSQEE LQLATGGQET THVQHQLKLN SAYSGVPGTY RTRDQRGEPL ATTYHSRFLG
401: TVDYIWHTKE LVPVRVLETL PADVLRRTGG LPSENWGSDH LAIACELGFV NDWQ

Arabidopsis Description

CCR4-5Carbon catabolite repressor protein 4 homolog 5 [Source:UniProtKB/Swiss-Prot;Acc:Q0WKY2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.