Factsheet for Bra015956.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 3
nucleus 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX96494	Canola	plastid	92.31	95.24
CDX73024	Canola	plastid	94.51	94.71
AT1G73875.1	Thale cress	nucleus	75.82	75.99
KRH48475	Soybean	cytosol	39.56	62.72
KRH39200	Soybean	nucleus, plastid	53.19	56.54
Solyc03g119570.1.1	Tomato	nucleus	48.13	52.39
VIT_17s0000g03760.t01	Wine grape	nucleus	52.97	52.05
PGSC0003DMT400014627	Potato	nucleus	45.71	46.85
GSMUA_Achr6P09650_001	Banana	nucleus	45.49	43.86
Bra022326.1-P	Field mustard	mitochondrion, plastid	37.8	37.31
Bra023195.1-P	Field mustard	nucleus	18.9	23.69
Bra038426.1-P	Field mustard	plastid	19.34	22.92
Bra008968.1-P	Field mustard	mitochondrion, plastid	36.7	22.06
Bra003342.1-P	Field mustard	cytosol	25.05	19.26
Bra003344.1-P	Field mustard	cytosol	24.18	19.2
Bra014566.1-P	Field mustard	cytosol	24.18	18.33
Bra007403.1-P	Field mustard	cytosol	23.74	18.09

Protein Annotations

EnsemblPlants:Bra015956.1	EnsemblPlants:Bra015956.1-P	EnsemblPlantsGene:Bra015956	Gene3D:3.60.10.10	InterPro:Endo/exonu/phosph_ase_sf	InterPro:Endo/exonuclease/phosphatase
InterPro:IPR036691	PANTHER:PTHR12121	PANTHER:PTHR12121:SF51	PFAM:PF03372	SEG:seg	SUPFAM:SSF56219
UniParc:UPI0002541DA4	UniProt:M4DHH9	MapMan:35.1	:	:	:

Description

AT1G73875 (E=3e-142) | endonuclease/exonuclease/phosphatase family protein

Coordinates

chrA07:+:20067270..20070446

Molecular Weight (calculated)

51697.3 Da

IEP (calculated)

9.696

GRAVY (calculated)

-0.596

Length

455 amino acids

Sequence
(BLAST)

001: MSSGGGYKAV NTARRTVTTV SKRKRSSISE PVHRPHPSLA PGPIHKPSKS SRRRRRIRKE RASSSVERQW VFSASNSRNI KDKLVLVSYN LLGVDNASNH
101: MDLYYNIPPQ HLEWSRRKHL ICKEISRYNA TILCLQASSD LYYKLYWLIN IIDKARNEVD RFDDLDSLLK LRGFEGVHKR RTGEASDGCS IFWKEKLFKL
201: LHHQEIEFDR FGLRNNVAQL CVLEMNCEDP ESKLRVQSSE QTSTSPRRLV VGNIHVLFNP KRGDIKLGQV RLLLERAYKL SQEWGNIPVA IAGDLNSTPK
301: SAIYDFVASA DLDTQLHDRR QISGQSDLDT NRSPFRNHYA VSASQTNEWS EEELQLATGG QATTHVRHEL KLNSAYAGVP GTQRTRDQCG EPLATTCHSR
401: FQGTVDYIWH TKELVPVRVL ETLPTDVLRR TGGLPSEKWG SDHLAIACEL GFVGE

Best Arabidopsis Sequence Match ( AT1G73875.1 )
(BLAST)

001: MSGYERKNTT ANSITITKRK RNSISEQSEN VYEKSNRKES ITLKPHRSFT PGFSQRDCKP VRHSKSSLRR RRRTKEKISS SVEREWVFSA NNFENLADKL
101: VLVSYNLLGV DNASNHMDLY YNVPRKHLEW SRRKHLICKE ISRYNASILC LQEVDRFDDL DVLLKNRGFR GVHKSRTGEA SDGCAIFWKE NLFELLDHQH
201: IEFDKFGMRN NVAQLCVLEM NCEEDPKSKL RVRSSDPRRL VVGNIHVLFN PKRGDIKLGQ VRLFLEKAYK LSQEWGNIPV AIAGDLNSTP QSAIYDFIAS
301: ADLDTQLHDR RQISGQTEVE PKERSFRNHY AFSASASISG SLLNEWSQEE LQLATGGQET THVQHQLKLN SAYSGVPGTY RTRDQRGEPL ATTYHSRFLG
401: TVDYIWHTKE LVPVRVLETL PADVLRRTGG LPSENWGSDH LAIACELGFV NDWQ

Arabidopsis Description

CCR4-5Carbon catabolite repressor protein 4 homolog 5 [Source:UniProtKB/Swiss-Prot;Acc:Q0WKY2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.