Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc03g119570.1.1 | Tomato | nucleus | 85.59 | 90.91 |
| KRH48475 | Soybean | cytosol | 36.71 | 56.79 |
| VIT_17s0000g03760.t01 | Wine grape | nucleus | 55.86 | 53.56 |
| KRH39200 | Soybean | nucleus, plastid | 48.87 | 50.7 |
| CDX96494 | Canola | plastid | 47.07 | 47.39 |
| AT1G73875.1 | Thale cress | nucleus | 47.97 | 46.92 |
| CDX73024 | Canola | plastid | 47.07 | 46.04 |
| Bra015956.1-P | Field mustard | plastid | 46.85 | 45.71 |
| GSMUA_Achr6P09650_001 | Banana | nucleus | 44.37 | 41.74 |
| PGSC0003DMT400040652 | Potato | cytosol, plastid | 18.02 | 21.98 |
| PGSC0003DMT400029795 | Potato | cytosol | 23.65 | 17.36 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400014627 | EnsemblPlantsGene:PGSC0003DMG400005718 | EntrezGene:102596606 | Gene3D:3.60.10.10 | InterPro:Endo/exonu/phosph_ase_sf | InterPro:Endo/exonuclease/phosphatase |
| InterPro:IPR036691 | PANTHER:PTHR12121 | PANTHER:PTHR12121:SF51 | PFAM:PF03372 | PGSC:PGSC0003DMG400005718 | RefSeq:XP_006341615.1 |
| SEG:seg | SUPFAM:SSF56219 | UniParc:UPI0002953E05 | UniProt:M1A4L1 | MapMan:35.1 | : |
Description
Carbon catabolite repressor protein 4 homolog 5 [Source:PGSC_GENE;Acc:PGSC0003DMG400005718]
Coordinates
chr3:+:58939078..58944770
Molecular Weight (calculated)
50668.9 Da
IEP (calculated)
9.671
GRAVY (calculated)
-0.617
Length
444 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRTGDGRDP PAEQPSRFSA SMKSRISQHD IGKHRSKKKQ RVSISKTETE TATLTLNHTS TSYTHSYANS YSYSYSRGKE KRHKGKAKRA IADDKRKWVY
101: STHVVSPNQD RVVFMSYNIL GVKNAAAHED LYRNVSPKYL DWDYRKKLIC KEIRDYNPGI MCFQEVDRFD DLDYLLQKEG FKGVYQARTG DASDGCAIFW
201: NSKLFDILHE ESIEFQNFNL RNNVCQLCAF KMNVKSSSKD MSASNSESVT SPSFLVGNIH VLYNPNRGDI KLGQVRLFLE SAQRLSHEWG DIPVVLAGDL
301: NSMPQSAMYQ FLTSNKLDIQ MHDRKQISGQ IYPLQNRSFN PRLSYRWSNE ELMLATGTGA SHLIHQLQLR SAYAGAPGSS RTRENSGEPL ATSYHSKFMG
401: TVDYIWHTTE FVPVRVLDTL PVDILRRTRG LPSEVRNGEV IIFL
101: STHVVSPNQD RVVFMSYNIL GVKNAAAHED LYRNVSPKYL DWDYRKKLIC KEIRDYNPGI MCFQEVDRFD DLDYLLQKEG FKGVYQARTG DASDGCAIFW
201: NSKLFDILHE ESIEFQNFNL RNNVCQLCAF KMNVKSSSKD MSASNSESVT SPSFLVGNIH VLYNPNRGDI KLGQVRLFLE SAQRLSHEWG DIPVVLAGDL
301: NSMPQSAMYQ FLTSNKLDIQ MHDRKQISGQ IYPLQNRSFN PRLSYRWSNE ELMLATGTGA SHLIHQLQLR SAYAGAPGSS RTRENSGEPL ATSYHSKFMG
401: TVDYIWHTTE FVPVRVLDTL PVDILRRTRG LPSEVRNGEV IIFL
001: MSGYERKNTT ANSITITKRK RNSISEQSEN VYEKSNRKES ITLKPHRSFT PGFSQRDCKP VRHSKSSLRR RRRTKEKISS SVEREWVFSA NNFENLADKL
101: VLVSYNLLGV DNASNHMDLY YNVPRKHLEW SRRKHLICKE ISRYNASILC LQEVDRFDDL DVLLKNRGFR GVHKSRTGEA SDGCAIFWKE NLFELLDHQH
201: IEFDKFGMRN NVAQLCVLEM NCEEDPKSKL RVRSSDPRRL VVGNIHVLFN PKRGDIKLGQ VRLFLEKAYK LSQEWGNIPV AIAGDLNSTP QSAIYDFIAS
301: ADLDTQLHDR RQISGQTEVE PKERSFRNHY AFSASASISG SLLNEWSQEE LQLATGGQET THVQHQLKLN SAYSGVPGTY RTRDQRGEPL ATTYHSRFLG
401: TVDYIWHTKE LVPVRVLETL PADVLRRTGG LPSENWGSDH LAIACELGFV NDWQ
101: VLVSYNLLGV DNASNHMDLY YNVPRKHLEW SRRKHLICKE ISRYNASILC LQEVDRFDDL DVLLKNRGFR GVHKSRTGEA SDGCAIFWKE NLFELLDHQH
201: IEFDKFGMRN NVAQLCVLEM NCEEDPKSKL RVRSSDPRRL VVGNIHVLFN PKRGDIKLGQ VRLFLEKAYK LSQEWGNIPV AIAGDLNSTP QSAIYDFIAS
301: ADLDTQLHDR RQISGQTEVE PKERSFRNHY AFSASASISG SLLNEWSQEE LQLATGGQET THVQHQLKLN SAYSGVPGTY RTRDQRGEPL ATTYHSRFLG
401: TVDYIWHTKE LVPVRVLETL PADVLRRTGG LPSENWGSDH LAIACELGFV NDWQ
Arabidopsis Description
CCR4-5Carbon catabolite repressor protein 4 homolog 5 [Source:UniProtKB/Swiss-Prot;Acc:Q0WKY2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.