Factsheet for PGSC0003DMT400029795

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400019556
PGSC0003DMT400046670
PGSC0003DMT400052826
PGSC0003DMT400069639

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G58560.1	PGSC0003DMT400052826	AT4G17950.1	21798944
AT3G58560.1	PGSC0003DMT400019556	AT4G24690.1	21798944
AT3G58560.1	PGSC0003DMT400046670	AT4G24690.1	21798944
AT3G58560.1	PGSC0003DMT400069639	AT4G24690.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g078950.1.1	Tomato	cytosol	90.41	97.5
VIT_08s0007g07020.t01	Wine grape	cytosol	86.78	87.06
KRH71803	Soybean	cytosol	26.12	85.87
KRH38033	Soybean	cytosol	81.16	81.83
KRH68083	Soybean	cytosol	81.16	81.56
KRG96349	Soybean	cytosol	80.83	81.5
KRH71804	Soybean	cytosol	51.24	80.94
CDX67751	Canola	cytosol	76.69	78.38
Bra003342.1-P	Field mustard	cytosol	76.53	78.21
AT3G58560.1	Thale cress	cytosol	77.69	78.07
CDX67753	Canola	cytosol	77.02	77.67
CDX98303	Canola	cytosol	75.87	77.53
CDY00572	Canola	cytosol	76.86	77.5
Bra014566.1-P	Field mustard	cytosol	76.69	77.33
Bra003344.1-P	Field mustard	cytosol	73.22	77.31
CDX88992	Canola	mitochondrion	70.74	77.26
Os10t0412100-01	Rice	cytosol	76.86	76.86
AT3G58580.1	Thale cress	cytosol	76.2	76.45
OQU91798	Sorghum	cytosol	76.53	76.4
Os03t0166800-01	Rice	cytosol	76.53	76.28
GSMUA_Achr4P17200_001	Banana	cytosol	73.55	76.2
Bra007403.1-P	Field mustard	cytosol	75.04	76.05
Zm00001d032979_P003	Maize	cytosol	76.03	76.03
GSMUA_Achr9P25420_001	Banana	cytosol	73.22	75.99
CDX71943	Canola	cytosol	75.37	75.75
TraesCS1A01G137900.1	Wheat	cytosol	75.54	75.54
TraesCS1D01G134400.1	Wheat	cytosol	75.54	75.54
CDY49233	Canola	cytosol	74.88	75.5
TraesCS1B01G153300.2	Wheat	cytosol	75.37	75.37
HORVU1Hr1G035390.1	Barley	cytosol	75.21	75.21
Zm00001d014187_P011	Maize	cytosol	74.38	74.63
GSMUA_Achr9P11040_001	Banana	cytosol, peroxisome, vacuole	70.58	74.0
KXG40109	Sorghum	mitochondrion	74.88	73.06
CDX98305	Canola	plastid	75.87	72.06
Zm00001d027811_P001	Maize	mitochondrion	74.38	69.88
GSMUA_Achr6P29710_001	Banana	endoplasmic reticulum, golgi	66.78	55.34
PGSC0003DMT400040652	Potato	cytosol, plastid	16.86	28.02
PGSC0003DMT400014627	Potato	nucleus	17.36	23.65

Protein Annotations

EnsemblPlants:PGSC0003DMT400029795	EnsemblPlantsGene:PGSC0003DMG400011448	EntrezGene:102598581	Gene3D:3.60.10.10	InterPro:Endo/exonu/phosph_ase_sf	InterPro:Endo/exonuclease/phosphatase
InterPro:IPR036691	InterPro:Zfn-C6H2	PANTHER:PTHR12121	PANTHER:PTHR12121:SF29	PFAM:PF03372	PFAM:PF15801
PGSC:PGSC0003DMG400011448	RefSeq:XP_006362208.1	SEG:seg	SUPFAM:SSF56219	UniParc:UPI0002956C23	UniProt:M1ATE6
MapMan:16.8.2.1.2.1	:	:	:	:	:

Description

Carbon catabolite repressor protein [Source:PGSC_GENE;Acc:PGSC0003DMG400011448]

Coordinates

chr10:+:58809032..58818672

Molecular Weight (calculated)

67272.1 Da

IEP (calculated)

7.375

GRAVY (calculated)

-0.246

Length

605 amino acids

Sequence
(BLAST)

001: MLSVLRVHLP SDIPIVGCEL TPYVLLRRPN KDKSVISEDV SESAPIDGYF LRYKWYRIQS DKKVAICSIH PSEQATLQCL GCVKAKIPVT KSYHCSPKCF
101: SDAWQHHRVL HERAASAVNE NGNEEEEIFG RFNSTGSGVT NASLASSQSS GSLANGTTPL YPAAITQRNG SETWFEVGRA KTYTPSADDI GHALKFECVV
201: VDAETKLPVG PSSTILTSRV IPAPCPTPRR MFSVSGVDIP GHLDLDGRLS SSGTFTVLSY NILSDAYATN ELYSYCPSWS LSWTYRRQNL LREIVGYRAD
301: IVCLQEVQSN HFEEFFAPEL DKHGYQALFK RKTAEVFSGS INNIDGCATF FRRDRFSHVK KYEVEFNKAA QSLTDAVVPI AQKKTALNRL VKDNVALIVV
401: LEAKFSNQGV DNPGKRQLVC VANTHVNVQQ ELRDVKLWQV HTLLKGLEKI AASADIPMLV CGDFNSMPGS APHTLLALGK VDPMHQDLVV DPLGILRPAS
501: KLTHQLPLVS AYSSFARMGV GLGLEQQRRR MDPNTNEPLF TNCTRDFIGT HDYIFYSADS LTVESLLELL DEESLRKDTA LPSPEWSSDH IALLAEFRCK
601: PRTRR

Best Arabidopsis Sequence Match ( AT3G58560.1 )
(BLAST)

001: MLSVIRVHLP SEIPIVGCEL TPYVLLRRPD KTPSTDDVPE SAPLEGHFLK YRWFRVQSDK KVAICSVHPS ETATLQCLGC LKSKVPVAKS YHCSTKCFSD
101: AWQHHRVLHE RAASAATEGN DEEELPRLNS SGSGSGVLST SVSLTNGSSS VYPSAITQKT GAGGETLVEV GRSKTYTPMA DDICHVLKFE CVVVNAETKQ
201: NVGLSCTILT SRVIPAPSPS PRRLISISGT DVTGHLDSNG RPLSMGTFTV LSYNILSDTY ASSDIYSYCP TWALAWTYRR QNLLREIVKY RADIVCLQEV
301: QNDHFEEFFL PELDKHGYQG LFKRKTNEVF IGNTNTIDGC ATFFRRDRFS HVKKYEVEFN KAAQSLTEAI IPVSQKKNAL NRLVKDNVAL IVVLEAKFGS
401: QAADNPGKRQ LLCVANTHVN VPHELKDVKL WQVHTLLKGL EKIAASADIP MLVCGDFNTV PASAPHTLLA VGKVDPLHPD LMVDPLGILR PHSKLTHQLP
501: LVSAYSQFAK MGGNVITEQQ RRRLDPASSE PLFTNCTRDF IGTLDYIFYT ADTLTVESLL ELLDEESLRK DTALPSPEWS SDHIALLAEF RCMPRARRNN
601: IL

Arabidopsis Description

CCR4-1Carbon catabolite repressor protein 4 homolog 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8W0Z9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.