Factsheet for PGSC0003DMT400052826

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 2
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400000467
PGSC0003DMT400014926
PGSC0003DMT400028657
PGSC0003DMT400031843

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G17950.1	PGSC0003DMT400014926	AT1G63470.1	21798944
AT4G17950.1	PGSC0003DMT400031843	AT1G63470.1	21798944
AT4G17950.1	PGSC0003DMT400028657	AT3G51780.1	21798944
AT4G17950.1	PGSC0003DMT400000467	AT3G61310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g006950.2.1	Tomato	nucleus	71.94	66.24
GSMUA_Achr5P03370_001	Banana	mitochondrion, plastid	25.56	48.42
PGSC0003DMT400045147	Potato	plastid	43.33	47.27
Os10t0572900-02	Rice	nucleus	32.78	47.01
HORVU2Hr1G105800.13	Barley	cytosol, vacuole	36.11	42.35
HORVU7Hr1G065300.2	Barley	mitochondrion, plastid	21.94	41.8
KRH58200	Soybean	nucleus	41.39	41.16
GSMUA_Achr4P27240_001	Banana	cytosol, extracellular, nucleus, plastid	38.89	39.77
PGSC0003DMT400045285	Potato	cytosol	16.11	39.19
OQU82226	Sorghum	plastid	36.94	38.33
GSMUA_Achr2P09840_001	Banana	nucleus	37.5	37.82
KRH04337	Soybean	nucleus	37.22	37.64
KRH28286	Soybean	plastid	35.28	37.46
CDY01503	Canola	cytosol	26.39	36.68
Os04t0589900-01	Rice	nucleus	38.33	36.41
PGSC0003DMT400059682	Potato	nucleus	32.5	35.89
KRH77206	Soybean	nucleus	33.06	35.21
PGSC0003DMT400075370	Potato	nucleus	35.0	35.2
CDY26693	Canola	plastid	25.83	34.44
PGSC0003DMT400035486	Potato	nucleus, plastid	24.72	34.1
Zm00001d026036_P001	Maize	nucleus	38.06	34.08
Zm00001d030053_P003	Maize	plastid	39.44	34.05
AT5G46640.1	Thale cress	nucleus	36.39	33.94
PGSC0003DMT400010017	Potato	plastid	30.0	33.86
CDY41027	Canola	cytosol	25.0	33.83
Bra025716.1-P	Field mustard	nucleus	25.28	33.83
PGSC0003DMT400032575	Potato	plastid	30.28	33.64
CDY41028	Canola	nucleus, plastid	23.06	33.47
TraesCS2A01G449500.1	Wheat	plastid	38.06	33.41
TraesCS2D01G448900.1	Wheat	cytosol, nucleus, peroxisome, plastid	38.06	33.25
TraesCS2B01G470900.1	Wheat	cytosol, nucleus, peroxisome, plastid	38.06	33.25
CDX78814	Canola	nucleus	37.5	33.17
Zm00001d047042_P004	Maize	cytosol, nucleus, plasma membrane	39.17	32.87
CDY26692	Canola	nucleus	27.5	32.67
Bra025717.1-P	Field mustard	nucleus	27.5	32.67
AT4G17950.1	Thale cress	nucleus	39.72	32.57
Bra025718.1-P	Field mustard	nucleus, plastid	27.5	32.57
PGSC0003DMT400033227	Potato	cytosol, nucleus, peroxisome	30.0	32.53
CDY26694	Canola	cytosol, plastid	23.61	32.44
Bra021027.1-P	Field mustard	nucleus	36.94	32.44
KXG38867	Sorghum	plastid	38.06	32.39
CDY68252	Canola	nucleus	26.67	32.32
CDY44500	Canola	nucleus	37.5	32.14
PGSC0003DMT400000467	Potato	nucleus	30.0	31.86
CDY26691	Canola	cytosol, plastid	27.5	31.83
CDY35172	Canola	nucleus	31.11	31.73
Bra017536.1-P	Field mustard	nucleus	31.11	31.73
PGSC0003DMT400071865	Potato	plastid	26.94	31.49
PGSC0003DMT400014926	Potato	plastid	30.0	31.3
CDY03203	Canola	nucleus	31.11	31.28
CDY08882	Canola	nucleus	37.5	31.03
CDX76549	Canola	nucleus	37.5	30.68
TraesCS1D01G194900.2	Wheat	nucleus	38.33	30.4
TraesCS1B01G206100.2	Wheat	nucleus	38.06	30.38
PGSC0003DMT400079651	Potato	nucleus	29.17	30.35
CDY01506	Canola	nucleus	25.28	30.23
TraesCS1A01G190900.1	Wheat	nucleus	38.06	30.18
HORVU1Hr1G049980.12	Barley	nucleus	38.06	29.53
Bra013270.1-P	Field mustard	nucleus	34.17	28.87
PGSC0003DMT400007056	Potato	nucleus	31.11	27.59
PGSC0003DMT400073848	Potato	nucleus	25.28	27.58
PGSC0003DMT400031843	Potato	plastid	28.61	26.82
PGSC0003DMT400075372	Potato	cytosol, nucleus, peroxisome	24.17	26.69

Protein Annotations

EnsemblPlants:PGSC0003DMT400052826	EnsemblPlantsGene:PGSC0003DMG400020503	Gene3D:3.30.1330.80	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:IPR005175	InterPro:PPC_dom	PANTHER:PTHR31500	PANTHER:PTHR31500:SF17	PFAM:PF03479	PFscan:PS51742
PGSC:PGSC0003DMG400020503	SEG:seg	SUPFAM:SSF117856	TMHMM:TMhelix	UniParc:UPI000296DBA8	UniProt:M1BU15
MapMan:35.1	:	:	:	:	:

Description

DNA binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400020503]

Coordinates

chr8:+:1289513..1293955

Molecular Weight (calculated)

36533.2 Da

IEP (calculated)

9.071

GRAVY (calculated)

-0.196

Length

360 amino acids

Sequence
(BLAST)

001: MAVAPPTPPP PQLLPNQQEQ FSSYILPTNV IFQQPQQQLN LQFPFNSVSD QNPNPSFLDD GSSVAAAGAV AGAVAGAVAG AGAGAGAKKK RGRPRKYSTD
101: GNNGSGVSAT PIAQIPVNQA DSGVGGVNGG ASLENSSKKV RGRPLGSGKK KKQEALGAVG FGFTPYVIPV HIGEDIANKI VNFSLQGPPA VCILAATGVV
201: CNVTLRQSII GGGTVTYEGR FNIISLSGSF LLSESNGNRS RTGGLSVALS GPDGRVLGGV VAGMLKAASP VQLVVGTFTP EKEKLMSEAP SSTPPPNVLN
301: FGAPVTETSS PSPGGSSDSV DENSGSPLSH EQGPFGNAAQ PMHNAPQPMH GMPTYWGQGM

Best Arabidopsis Sequence Match ( AT4G17950.1 )
(BLAST)

001: MDSREIHHQQ QQQQQQQQQQ QQQQQHLQQQ QQPPPGMLMS HHNSYNRNPN AAAAVLMGHN TSTSQAMHQR LPFGGSMSPH QPQQHQYHHP QPQQQIDQKT
101: LESLGFDGSP SSVAATQQHS MRFGIDHQQV KKKRGRPRKY AADGGGGGGG GSNIALGLAP TSPLPSASNS YGGGNEGGGG GDSAGANANS SDPPAKRNRG
201: RPPGSGKKQL DALGGTGGVG FTPHVIEVKT GEDIATKILA FTNQGPRAIC ILSATGAVTN VMLRQANNSN PTGTVKYEGR FEIISLSGSF LNSESNGTVT
301: KTGNLSVSLA GHEGRIVGGC VDGMLVAGSQ VQVIVGSFVP DGRKQKQSAG RAQNTPEPAS APANMLSFGG VGGPGSPRSQ GQQHSSESSE ENESNSPLHR
401: RSNNNNSNNH GIFGNSTPQP LHQIPMQMYQ NLWPGNSPQ

Arabidopsis Description

AHL13AT-hook motif nuclear-localized protein 13 [Source:UniProtKB/Swiss-Prot;Acc:Q940I0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.