Factsheet for PGSC0003DMT400059682

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g038760.2.1	Tomato	nucleus	89.88	89.88
PGSC0003DMT400075370	Potato	nucleus	46.93	42.74
PGSC0003DMT400045285	Potato	cytosol	19.02	41.89
PGSC0003DMT400035486	Potato	nucleus, plastid	32.82	41.0
Zm00001d020951_P002	Maize	cytosol, nucleus, peroxisome, plastid	41.1	40.0
TraesCS5D01G274900.1	Wheat	plastid	35.28	39.25
PGSC0003DMT400045147	Potato	plastid	38.96	38.48
PGSC0003DMT400010017	Potato	plastid	33.74	34.48
PGSC0003DMT400032575	Potato	plastid	33.44	33.64
PGSC0003DMT400000467	Potato	nucleus	34.66	33.33
PGSC0003DMT400071865	Potato	plastid	31.29	33.12
TraesCS5B01G266600.1	Wheat	endoplasmic reticulum, mitochondrion, nucleus, peroxisome	39.57	32.66
PGSC0003DMT400033227	Potato	cytosol, nucleus, peroxisome	33.13	32.53
PGSC0003DMT400052826	Potato	nucleus	35.89	32.5
TraesCS5A01G267000.1	Wheat	nucleus, peroxisome, vacuole	38.96	31.99
PGSC0003DMT400073848	Potato	nucleus	31.6	31.21
PGSC0003DMT400014926	Potato	plastid	32.52	30.72
PGSC0003DMT400075372	Potato	cytosol, nucleus, peroxisome	30.06	30.06
PGSC0003DMT400079651	Potato	nucleus	30.98	29.19
PGSC0003DMT400031843	Potato	plastid	31.6	26.82
PGSC0003DMT400007056	Potato	nucleus	31.9	25.62
TraesCS5A01G266900.1	Wheat	cytosol	0.31	0.85
TraesCS5B01G266500.1	Wheat	cytosol	0.31	0.85
TraesCS5D01G274800.1	Wheat	cytosol	0.31	0.85
Zm00001d020950_P001	Maize	cytosol	0.31	0.85

Protein Annotations

Gene3D:3.30.1330.80	MapMan:35.1	InterPro:AT_hook_DNA-bd_motif	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	InterPro:IPR005175	UniProt:M1C4K9	PFAM:PF03479	EnsemblPlantsGene:PGSC0003DMG400023200	PGSC:PGSC0003DMG400023200
EnsemblPlants:PGSC0003DMT400059682	InterPro:PPC_dom	PFscan:PS51742	PANTHER:PTHR31500	PANTHER:PTHR31500:SF0	SMART:SM00384
SUPFAM:SSF117856	UniParc:UPI000295D597	SEG:seg	:	:	:

Description

DNA binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400023200]

Coordinates

chr00:-:21761900..21766897

Molecular Weight (calculated)

33202.3 Da

IEP (calculated)

7.830

GRAVY (calculated)

-0.136

Length

326 amino acids

Sequence
(BLAST)

001: MSFVDSNGVH ASMQHLVSSD GATTPYYPIM PPISSPPLTT EIYQVPTPGI TIPLPDLSVI TIPNSIEPVK RKRGRPRKYA PDGSANSGIV SPPSAAQSGG
101: GVSPTEGGDV PLRKKGRGRP PGSGRKQQLG DLGSAGAGTG FKPHIITVQA GEDVWAKLMS FSQSTSQAVC IMSANGSISN VTLQQAAMSV GNVTYEGQFE
201: ILSLSGHFLP SESGGERIRT GGLSVLLAGP DGHALGGGVA GVLTAASAVQ VIVGSFGIQG QKQLKLDHSD GFGVPSLLHP PGSTAAKSPS SLGTVSESSG
301: EPVSPHNQLG EASNISTPVV ANNFPW

Best Arabidopsis Sequence Match ( AT2G33620.1 )
(BLAST)

001: MSGSETGLMA ATRESMQFTM ALHQQQQHSQ AQPQQSQNRP LSFGGDDGTA LYKQPMRSVS PPQQYQPNSA GENSVLNMNL PGGESGGMTG TGSEPVKKRR
101: GRPRKYGPDS GEMSLGLNPG APSFTVSQPS SGGDGGEKKR GRPPGSSSKR LKLQALGSTG IGFTPHVLTV LAGEDVSSKI MALTHNGPRA VCVLSANGAI
201: SNVTLRQSAT SGGTVTYEGR FEILSLSGSF HLLENNGQRS RTGGLSVSLS SPDGNVLGGS VAGLLIAASP VQIVVGSFLP DGEKEPKQHV GQMGLSSPVL
301: PRVAPTQVLM TPSSPQSRGT MSESSCGGGH GSPIHQSTGG PYNNTINMPW K

Arabidopsis Description

AHL10AT-hook motif nuclear-localized protein 10 [Source:UniProtKB/Swiss-Prot;Acc:O22812]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.