Factsheet for TraesCS5D01G274900.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 1
mitochondrion 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G266600.1	Wheat	endoplasmic reticulum, mitochondrion, nucleus, peroxisome	97.27	72.15
TraesCS5A01G267000.1	Wheat	nucleus, peroxisome, vacuole	96.25	71.03
TraesCS7D01G247300.2	Wheat	mitochondrion, nucleus, peroxisome, plastid	53.58	42.43
Zm00001d020951_P002	Maize	cytosol, nucleus, peroxisome, plastid	47.44	41.49
PGSC0003DMT400059682	Potato	nucleus	39.25	35.28
Solyc02g038760.2.1	Tomato	nucleus	38.91	34.97
PGSC0003DMT400035486	Potato	nucleus, plastid	27.3	30.65
TraesCS1D01G194900.2	Wheat	nucleus	46.76	30.18
TraesCS2D01G448900.1	Wheat	cytosol, nucleus, peroxisome, plastid	41.3	29.37
TraesCS5D01G138000.1	Wheat	plastid	35.84	28.61
TraesCS7D01G312100.1	Wheat	plastid	38.23	28.21
Solyc02g082300.2.1	Tomato	nucleus, plastid	24.57	27.59
TraesCS7D01G133700.1	Wheat	cytosol	20.14	25.65
TraesCS6D01G076900.1	Wheat	nucleus	34.47	25.51
TraesCS2D01G597900.1	Wheat	cytosol, nucleus, plasma membrane, plastid	31.06	22.47
TraesCS7D01G134100.1	Wheat	nucleus	27.3	22.1
TraesCS5A01G266900.1	Wheat	cytosol	0.68	1.71
TraesCS5B01G266500.1	Wheat	cytosol	0.68	1.71
TraesCS5D01G274800.1	Wheat	cytosol	0.68	1.71
Zm00001d020950_P001	Maize	cytosol	0.68	1.71

Protein Annotations

EnsemblPlants:TraesCS5D01G274900.1	EnsemblPlantsGene:TraesCS5D01G274900	Gene3D:3.30.1330.80	InterPro:IPR005175	InterPro:PPC_dom	PANTHER:PTHR31500
PANTHER:PTHR31500:SF0	PFAM:PF03479	PFscan:PS51742	SEG:seg	SUPFAM:SSF117856	TIGR:cd11378
TMHMM:TMhelix	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chr5D:-:377535426..377537955

Molecular Weight (calculated)

29065.0 Da

IEP (calculated)

10.764

GRAVY (calculated)

0.070

Length

293 amino acids

Sequence
(BLAST)

001: MKYGDDGSTS LALVPVPMPG EPTAVAPGDS GAFSAPAGKP AAGGVLAVPP VGMKKRGRPK GSTNKVKKQD KVMSALAFIG TAGAGFTPHV IAVQAGEDVA
101: AKILSFAQHG VRAVVVLSAN GAISNVTLRQ SATSGGTVTY EGRFEILSLS GSFTVQETGG HRSRTGGLSV SLASPDGRVL GGGIAGLLIA CTPIQVVVGT
201: FNTVAEKKKA PKHAAAAAAA HEPASAPPRM TPSFVPAPIA VPPLAHAPIS VGMAQNSPPS RGTLSESSGS PMNQGVPAAA TPSNSGLSSM PWK

Best Arabidopsis Sequence Match ( AT2G33620.1 )
(BLAST)

001: MSGSETGLMA ATRESMQFTM ALHQQQQHSQ AQPQQSQNRP LSFGGDDGTA LYKQPMRSVS PPQQYQPNSA GENSVLNMNL PGGESGGMTG TGSEPVKKRR
101: GRPRKYGPDS GEMSLGLNPG APSFTVSQPS SGGDGGEKKR GRPPGSSSKR LKLQALGSTG IGFTPHVLTV LAGEDVSSKI MALTHNGPRA VCVLSANGAI
201: SNVTLRQSAT SGGTVTYEGR FEILSLSGSF HLLENNGQRS RTGGLSVSLS SPDGNVLGGS VAGLLIAASP VQIVVGSFLP DGEKEPKQHV GQMGLSSPVL
301: PRVAPTQVLM TPSSPQSRGT MSESSCGGGH GSPIHQSTGG PYNNTINMPW K

Arabidopsis Description

AHL10AT-hook motif nuclear-localized protein 10 [Source:UniProtKB/Swiss-Prot;Acc:O22812]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.