Factsheet for PGSC0003DMT400035486

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
plastid 4
cytosol 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g082300.2.1	Tomato	nucleus, plastid	76.25	76.25
PGSC0003DMT400059682	Potato	nucleus	41.0	32.82
PGSC0003DMT400045285	Potato	cytosol	18.01	31.76
Zm00001d020951_P002	Maize	cytosol, nucleus, peroxisome, plastid	36.78	28.66
PGSC0003DMT400045147	Potato	plastid	36.02	28.48
TraesCS5D01G274900.1	Wheat	plastid	30.65	27.3
PGSC0003DMT400075370	Potato	nucleus	37.16	27.09
PGSC0003DMT400000467	Potato	nucleus	33.72	25.96
PGSC0003DMT400052826	Potato	nucleus	34.1	24.72
PGSC0003DMT400033227	Potato	cytosol, nucleus, peroxisome	31.42	24.7
PGSC0003DMT400071865	Potato	plastid	28.74	24.35
PGSC0003DMT400079651	Potato	nucleus	32.18	24.28
PGSC0003DMT400014926	Potato	plastid	31.8	24.06
PGSC0003DMT400010017	Potato	plastid	29.12	23.82
PGSC0003DMT400032575	Potato	plastid	29.5	23.77
PGSC0003DMT400075372	Potato	cytosol, nucleus, peroxisome	29.5	23.62
TraesCS5B01G266600.1	Wheat	endoplasmic reticulum, mitochondrion, nucleus, peroxisome	35.25	23.29
PGSC0003DMT400073848	Potato	nucleus	29.12	23.03
TraesCS5A01G267000.1	Wheat	nucleus, peroxisome, vacuole	34.87	22.92
PGSC0003DMT400031843	Potato	plastid	29.12	19.79
PGSC0003DMT400007056	Potato	nucleus	29.89	19.21
TraesCS5B01G266500.1	Wheat	cytosol	0.0	0.0
TraesCS5A01G266900.1	Wheat	cytosol	0.0	0.0
TraesCS5D01G274800.1	Wheat	cytosol	0.0	0.0
Zm00001d020950_P001	Maize	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:PGSC0003DMT400035486	EnsemblPlantsGene:PGSC0003DMG400013641	EntrezGene:102601697	Gene3D:3.30.1330.80	InterPro:IPR005175	InterPro:PPC_dom
PANTHER:PTHR31500	PANTHER:PTHR31500:SF44	PFAM:PF03479	PFscan:PS51742	PGSC:PGSC0003DMG400013641	RefSeq:XP_006364838.1
SEG:seg	SUPFAM:SSF117856	UniParc:UPI000296F57B	UniProt:M1B2C5	MapMan:35.2	:

Description

DNA binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400013641]

Coordinates

chr2:+:38075034..38077324

Molecular Weight (calculated)

26477.1 Da

IEP (calculated)

4.813

GRAVY (calculated)

-0.092

Length

261 amino acids

Sequence
(BLAST)

001: MENVGSPSAS AADDGTPMQP ISSSTPPVPS FPAPLGSTGV PPVSPTETRK RGRSSPGMTT PSPSQVAGGG LSSPTQPQAD ESAVSTGKKQ QSVDLGSEAA
101: ALGFMQSHVI KIEAGQDILA KIMSFCESTS KAVCVLSANG SISNVSLRRP DEPVTHKGLY EILSLTGFFF VLESGGQRSR EGCLTVILGN AADGDVLGGN
201: VDGLFTAATD VQVIVSSFST EKQGQVKSDN FGTPATLAST SRSPMSVGTL FGSVSPVSPL G

Best Arabidopsis Sequence Match ( AT2G33620.1 )
(BLAST)

001: MSGSETGLMA ATRESMQFTM ALHQQQQHSQ AQPQQSQNRP LSFGGDDGTA LYKQPMRSVS PPQQYQPNSA GENSVLNMNL PGGESGGMTG TGSEPVKKRR
101: GRPRKYGPDS GEMSLGLNPG APSFTVSQPS SGGDGGEKKR GRPPGSSSKR LKLQALGSTG IGFTPHVLTV LAGEDVSSKI MALTHNGPRA VCVLSANGAI
201: SNVTLRQSAT SGGTVTYEGR FEILSLSGSF HLLENNGQRS RTGGLSVSLS SPDGNVLGGS VAGLLIAASP VQIVVGSFLP DGEKEPKQHV GQMGLSSPVL
301: PRVAPTQVLM TPSSPQSRGT MSESSCGGGH GSPIHQSTGG PYNNTINMPW K

Arabidopsis Description

AHL10AT-hook motif nuclear-localized protein 10 [Source:UniProtKB/Swiss-Prot;Acc:O22812]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.