Factsheet for PGSC0003DMT400075372

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
plasma membrane 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g019430.1.1	Tomato	cytosol, plastid, vacuole	45.4	77.08
PGSC0003DMT400045285	Potato	cytosol	18.1	39.86
Bra022946.1-P	Field mustard	nucleus	26.99	33.59
CDX79537	Canola	mitochondrion, nucleus, plastid	26.99	33.59
CDX84679	Canola	nucleus	26.99	33.59
GSMUA_Achr7P20540_001	Banana	nucleus	29.75	33.11
VIT_18s0122g00700.t01	Wine grape	nucleus	33.74	31.16
PGSC0003DMT400075370	Potato	nucleus	33.44	30.45
PGSC0003DMT400010017	Potato	plastid	29.45	30.09
PGSC0003DMT400059682	Potato	nucleus	30.06	30.06
GSMUA_Achr3P03710_001	Banana	nucleus	33.13	29.59
PGSC0003DMT400035486	Potato	nucleus, plastid	23.62	29.5
PGSC0003DMT400032575	Potato	plastid	28.83	29.01
Os09t0491708-01	Rice	nucleus	31.9	28.97
TraesCS7A01G134300.1	Wheat	cytosol	17.48	28.93
Os08t0512400-02	Rice	nucleus	30.06	27.68
TraesCS7B01G035400.1	Wheat	cytosol	16.87	27.5
GSMUA_Achr6P03420_001	Banana	nucleus	30.37	27.5
PGSC0003DMT400033227	Potato	cytosol, nucleus, peroxisome	27.91	27.41
GSMUA_Achr9P12360_001	Banana	extracellular, vacuole	34.05	27.27
KXG25625	Sorghum	nucleus	30.98	27.08
OQU89696	Sorghum	nucleus	31.6	27.03
AT2G33620.2	Thale cress	nucleus	28.83	26.78
HORVU7Hr1G027950.1	Barley	extracellular, mitochondrion, plasma membrane	19.33	26.58
Zm00001d037425_P001	Maize	nucleus	28.83	26.33
OQU76344	Sorghum	nucleus	29.14	26.24
Zm00001d052901_P002	Maize	nucleus	29.45	26.02
PGSC0003DMT400045147	Potato	plastid	26.07	25.76
Bra021865.1-P	Field mustard	nucleus	27.3	25.43
PGSC0003DMT400000467	Potato	nucleus	26.07	25.07
TraesCS7B01G143000.1	Wheat	nucleus	27.61	24.93
PGSC0003DMT400079651	Potato	nucleus	26.38	24.86
TraesCS7D01G133700.1	Wheat	cytosol	17.48	24.78
PGSC0003DMT400014926	Potato	plastid	26.07	24.64
HORVU7Hr1G051150.4	Barley	nucleus	27.61	24.52
KRH60876	Soybean	nucleus	26.69	24.37
PGSC0003DMT400071865	Potato	plastid	23.01	24.35
TraesCS7D01G247300.2	Wheat	mitochondrion, nucleus, peroxisome, plastid	27.61	24.32
TraesCS7A01G248500.1	Wheat	nucleus	27.61	24.32
CDY37704	Canola	nucleus	27.91	24.27
KRH51558	Soybean	nucleus	26.38	24.23
PGSC0003DMT400052826	Potato	nucleus	26.69	24.17
Zm00001d006034_P003	Maize	nucleus	31.29	23.72
CDY23720	Canola	extracellular, plasma membrane, vacuole	28.83	23.62
Zm00001d031481_P001	Maize	nucleus, peroxisome, plasma membrane, plastid	29.75	23.54
GSMUA_Achr5P23820_001	Banana	cytosol, nucleus, plasma membrane	30.06	23.28
HORVU5Hr1G073550.1	Barley	nucleus, peroxisome, plastid	27.61	22.96
Os06t0326000-01	Rice	nucleus	26.38	22.75
PGSC0003DMT400073848	Potato	nucleus	22.09	21.82
PGSC0003DMT400031843	Potato	plastid	25.15	21.35
PGSC0003DMT400007056	Potato	nucleus	26.38	21.18
TraesCS7D01G134100.1	Wheat	nucleus	23.31	20.99
TraesCS7B01G035900.1	Wheat	nucleus	23.01	20.66
HORVU7Hr1G028110.15	Barley	plasma membrane	22.09	19.41

Protein Annotations

EnsemblPlants:PGSC0003DMT400075372	EnsemblPlantsGene:PGSC0003DMG402029312	EntrezGene:102603582	Gene3D:3.30.1330.80	InterPro:IPR005175	InterPro:PPC_dom
PANTHER:PTHR31500	PANTHER:PTHR31500:SF0	PFAM:PF03479	PFscan:PS51742	PGSC:PGSC0003DMG402029312	RefSeq:XP_006342529.1
SUPFAM:SSF117856	UniParc:UPI0002969BF3	UniProt:M1CV18	MapMan:35.1	:	:

Description

DNA binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG402029312]

Coordinates

chr12:-:57552532..57558870

Molecular Weight (calculated)

33819.0 Da

IEP (calculated)

6.127

GRAVY (calculated)

0.016

Length

326 amino acids

Sequence
(BLAST)

001: MGFLSDNRGV RASFGTHPPS NEQQLPGSTG FGFPPQIIEV EIGEDVASKV LSFTQNCPRD VCVLSATGVL SNVSLIKDDT SEGATTFEGQ FVIVSLSGSF
101: LLSEIGSQRS RTGGLSVSLA KPDGWVFGGS VTGVLTAASP IQIIVGEFVA NGQVPTTTNQ QQIPRSIGSG VAQHIITVKT GEDVSSKIVS FIHSSPRAVC
201: IMSATGELSN VTVFQADASG GEATYEGLFK IQTLSGSFLP FENGDPQSRM GGFSVSLTGS DQRTFGGAVS GDLIAASPVE VIVYSFAAPA APMNPKFVVP
301: SRGMQSGLPS ELAGHPKGKR SGNRKR

Best Arabidopsis Sequence Match ( AT2G33620.1 )
(BLAST)

001: MSGSETGLMA ATRESMQFTM ALHQQQQHSQ AQPQQSQNRP LSFGGDDGTA LYKQPMRSVS PPQQYQPNSA GENSVLNMNL PGGESGGMTG TGSEPVKKRR
101: GRPRKYGPDS GEMSLGLNPG APSFTVSQPS SGGDGGEKKR GRPPGSSSKR LKLQALGSTG IGFTPHVLTV LAGEDVSSKI MALTHNGPRA VCVLSANGAI
201: SNVTLRQSAT SGGTVTYEGR FEILSLSGSF HLLENNGQRS RTGGLSVSLS SPDGNVLGGS VAGLLIAASP VQIVVGSFLP DGEKEPKQHV GQMGLSSPVL
301: PRVAPTQVLM TPSSPQSRGT MSESSCGGGH GSPIHQSTGG PYNNTINMPW K

Arabidopsis Description

AHL10AT-hook motif nuclear-localized protein 10 [Source:UniProtKB/Swiss-Prot;Acc:O22812]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.