CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d006034_P003	Maize	nucleus	89.24	79.07
Os09t0491708-01	Rice	nucleus	69.82	74.09
KXG25625	Sorghum	nucleus	65.09	66.49
CDX84679	Canola	nucleus	41.21	59.92
GSMUA_Achr6P03420_001	Banana	nucleus	56.43	59.72
Bra022946.1-P	Field mustard	nucleus	40.68	59.16
CDX79537	Canola	mitochondrion, nucleus, plastid	40.68	59.16
VIT_18s0122g00700.t01	Wine grape	nucleus	54.59	58.92
GSMUA_Achr3P03710_001	Banana	nucleus	56.17	58.63
GSMUA_Achr9P12360_001	Banana	extracellular, vacuole	58.53	54.79
PGSC0003DMT400075370	Potato	nucleus	49.61	52.79
AT2G33620.2	Thale cress	nucleus	48.03	52.14
Solyc12g094710.1.1	Tomato	nucleus	48.56	51.82
HORVU5Hr1G073550.1	Barley	nucleus, peroxisome, plastid	53.02	51.53
Bra021865.1-P	Field mustard	nucleus	45.67	49.71
GSMUA_Achr5P23820_001	Banana	cytosol, nucleus, plasma membrane	54.86	49.64
OQU76344	Sorghum	nucleus	46.46	48.9
KRH60876	Soybean	nucleus	43.57	46.5
OQU82226	Sorghum	plastid	42.26	46.4
KRH51558	Soybean	nucleus	43.04	46.2
CDY37704	Canola	nucleus	45.14	45.87
CDY23720	Canola	extracellular, plasma membrane, vacuole	46.19	44.22
KXG38867	Sorghum	plastid	44.36	39.95
KXG24283	Sorghum	plastid	37.53	36.39
KXG29351	Sorghum	plastid	34.91	35.47
EES07975	Sorghum	cytosol	33.33	35.08
EES15662	Sorghum	cytosol, nucleus, peroxisome	32.55	34.83
Solyc12g019430.1.1	Tomato	cytosol, plastid, vacuole	16.8	33.33
OQU85994	Sorghum	nucleus	34.91	33.17
PGSC0003DMT400075372	Potato	cytosol, nucleus, peroxisome	27.03	31.6
KXG27470	Sorghum	nucleus	29.13	26.55

Protein Annotations

Gene3D:3.30.1330.80	MapMan:35.1	EntrezGene:8064859	InterPro:AT_hook_DNA-bd_motif	UniProt:C5X4G6	ProteinID:EER99099.1
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	InterPro:IPR005175	EnsemblPlants:OQU89696
ProteinID:OQU89696	ProteinID:OQU89696.1	ProteinID:OQU89697.1	ProteinID:OQU89698.1	PFAM:PF03479	InterPro:PPC_dom
PFscan:PS51742	PANTHER:PTHR31500	PANTHER:PTHR31500:SF0	SMART:SM00384	EnsemblPlantsGene:SORBI_3002G249000	SUPFAM:SSF117856
unigene:Sbi.19719	UniParc:UPI0001A84290	RefSeq:XP_002462578.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr2:-:63631019..63634916

Molecular Weight (calculated)

37427.3 Da

IEP (calculated)

10.903

GRAVY (calculated)

-0.229

Length

381 amino acids

Sequence
(BLAST)

001: MMEVSPSPEQ GVMAGREPFG LPKTPATPPS SGVTQSLRMA YTTDGTAIFT PVSSAPPATA TYHQPVAASS LAGVGGNGGA PVHSGGAGEP VAKKKRGRPR
101: KYGPDGSMSL ALVPVPASIA AAPAPAPAAP GASGPFSPSG PKALNTAPSA SPDGAKKRGR PKGSTNKKHV PALGPTGAGF TPHLIFVKAG EDVSAKIMSF
201: SQHGTRAVCI LSANGAISNV TLRQSATSGG TVTYEGRFEI LSLSGSFLLS ENGGHRSRTG GLSVSLAGPD GRVLGGSVAG LLTAASPVQI VVGSFDADGK
301: KEPKRKKLAP SPSDPSPAPL KLAPATTGVA AGPSSPPSRG TLSLSESSSG APSPPHAGAS GGGGGHGQQQ QPGVFSGLSW K

Best Arabidopsis Sequence Match ( AT2G33620.3 )
(BLAST)

001: MSGSETGLMA ATRESMQFTM ALHQQQQHSQ AQPQQSQNRP LSFGGDDGTA LYKQPMRSVS PPQQYQPNSA GENSVLNMNL PGGESGGMTG TGSEPVKKRR
101: GRPRKYGPDS GEMSLGLNPG APSFTVSQPS SGGDGGEKKR GRPPGSSSKR LKLQALGSTG IGFTPHVLTV LAGEDVSSKI MALTHNGPRA VCVLSANGAI
201: SNVTLRQSAT SGGTVTYEGR FEILSLSGSF HLLENNGQRS RTGGLSVSLS SPDGNVLGGS VAGLLIAASP VQIVVGSFLP DGEKEPKQHV GQMGLSSPVL
301: PRVAPTQVLM TPSSPQSRGT MSESSCGGGH GSPIHQSTGG PYNNTINMPW K

Arabidopsis Description

AHL10AT-hook motif nuclear-localized protein 10 [Source:UniProtKB/Swiss-Prot;Acc:O22812]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.