Factsheet for VIT_18s0122g00700.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P03710_001	Banana	nucleus	67.99	65.75
CDX79537	Canola	mitochondrion, nucleus, plastid	48.44	65.27
Bra022946.1-P	Field mustard	nucleus	48.16	64.89
CDX84679	Canola	nucleus	48.16	64.89
GSMUA_Achr6P03420_001	Banana	nucleus	65.72	64.44
GSMUA_Achr7P20540_001	Banana	nucleus	51.56	62.12
GSMUA_Achr9P12360_001	Banana	extracellular, vacuole	70.54	61.18
PGSC0003DMT400075370	Potato	nucleus	60.91	60.06
AT2G33620.2	Thale cress	nucleus	59.49	59.83
Solyc12g094710.1.1	Tomato	nucleus	59.21	58.54
Bra021865.1-P	Field mustard	nucleus	56.94	57.43
Os08t0512400-02	Rice	nucleus	56.94	56.78
Os09t0491708-01	Rice	nucleus	57.51	56.55
KXG25625	Sorghum	nucleus	58.92	55.76
GSMUA_Achr5P23820_001	Banana	cytosol, nucleus, plasma membrane	66.01	55.34
OQU89696	Sorghum	nucleus	58.92	54.59
CDY37704	Canola	nucleus	56.94	53.6
TraesCS7B01G143000.1	Wheat	nucleus	53.54	52.35
TraesCS7A01G248500.1	Wheat	nucleus	54.67	52.16
Zm00001d052901_P002	Maize	nucleus	54.39	52.03
TraesCS7D01G247300.2	Wheat	mitochondrion, nucleus, peroxisome, plastid	54.39	51.89
HORVU7Hr1G051150.4	Barley	nucleus	53.82	51.77
CDY23720	Canola	extracellular, plasma membrane, vacuole	57.51	51.01
KRH60876	Soybean	nucleus	49.58	49.02
OQU76344	Sorghum	nucleus	50.14	48.9
KRH51558	Soybean	nucleus	49.01	48.73
Zm00001d037425_P001	Maize	nucleus	48.73	48.18
Zm00001d006034_P003	Maize	nucleus	58.64	48.14
Zm00001d031481_P001	Maize	nucleus, peroxisome, plasma membrane, plastid	56.09	48.06
VIT_02s0012g00900.t01	Wine grape	nucleus	47.59	47.59
HORVU5Hr1G073550.1	Barley	nucleus, peroxisome, plastid	51.84	46.68
VIT_15s0046g02930.t01	Wine grape	nucleus, plastid	43.91	44.93
VIT_15s0048g00870.t01	Wine grape	nucleus	41.08	43.41
Os06t0326000-01	Rice	nucleus	46.46	43.39
VIT_02s0025g05130.t01	Wine grape	cytosol, nucleus, peroxisome	40.51	43.33
VIT_16s0022g01810.t01	Wine grape	cytosol, nucleus, peroxisome	42.21	42.45
VIT_08s0007g04020.t01	Wine grape	nucleus	39.94	39.06
VIT_02s0025g03580.t01	Wine grape	nucleus	36.83	37.57
Solyc12g019430.1.1	Tomato	cytosol, plastid, vacuole	19.83	36.46
TraesCS7A01G134300.1	Wheat	cytosol	20.11	36.04
TraesCS7B01G035400.1	Wheat	cytosol	19.83	35.0
VIT_14s0081g00620.t01	Wine grape	nucleus	34.28	33.89
PGSC0003DMT400075372	Potato	cytosol, nucleus, peroxisome	31.16	33.74
HORVU7Hr1G027950.1	Barley	extracellular, mitochondrion, plasma membrane	22.38	33.33
TraesCS7D01G133700.1	Wheat	cytosol	20.4	31.3
TraesCS7D01G134100.1	Wheat	nucleus	31.73	30.94
TraesCS7B01G035900.1	Wheat	nucleus	31.44	30.58
HORVU7Hr1G028110.15	Barley	plasma membrane	29.75	28.3

Protein Annotations

EntrezGene:100263332	wikigene:100263332	Gene3D:3.30.1330.80	MapMan:35.1	EMBL:AM434559	InterPro:AT_hook_DNA-bd_motif
ProteinID:CAN64876	ProteinID:CAN64876.1	ProteinID:CBI40765	ProteinID:CBI40765.3	UniProt:D7UDF0	EMBL:FN596759
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	InterPro:IPR005175	EntrezGene:LOC100263332
wikigene:LOC100263332	PFAM:PF03479	InterPro:PPC_dom	PFscan:PS51742	PANTHER:PTHR31500	PANTHER:PTHR31500:SF0
SMART:SM00384	SUPFAM:SSF117856	UniParc:UPI00015CC560	ArrayExpress:VIT_18s0122g00700	EnsemblPlantsGene:VIT_18s0122g00700	EnsemblPlants:VIT_18s0122g00700.t01
unigene:Vvi.13698	RefSeq:XP_002275328	RefSeq:XP_002275328.1	RefSeq:XP_010664007.1	RefSeq:XP_010664008.1	RefSeq:XP_010664009.1
RefSeq:XP_010664010.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr18:+:539606..545190

Molecular Weight (calculated)

35077.4 Da

IEP (calculated)

10.788

GRAVY (calculated)

-0.291

Length

353 amino acids

Sequence
(BLAST)

001: MSGSETGIMT TREPFSMGLQ KNAVPSQPVI QNMRLAFSPD GAAVYKPVSG TSPPYQSSGG TGGDGSTGGA IIPHGLNMNM GSEPLKRKRG RPRKYGPDGT
101: MALALSPAPS GVNVSQSGGA FSSPPASAGS ASPSSLKKAR GRPPGSSKKQ QMEALGSAGV GFTPHVITVK AGEDVSSKIM SFSQHGPRAV CILSANGAIS
201: NVTLRQPATS GGTVTYEGRF EILSLSGSFL LSENGGQRSR TGGLSVSLSG PDGRVLGGGV AGLLTAASPV QVVVGSFIAD GRKESKSASQ VEPSSAPPKI
301: APVGGGGGVT GTSSPPSRGT LSESSGGPGS PLNQSTGACN NSNPPGMTSI PWK

Best Arabidopsis Sequence Match ( AT2G33620.3 )
(BLAST)

001: MSGSETGLMA ATRESMQFTM ALHQQQQHSQ AQPQQSQNRP LSFGGDDGTA LYKQPMRSVS PPQQYQPNSA GENSVLNMNL PGGESGGMTG TGSEPVKKRR
101: GRPRKYGPDS GEMSLGLNPG APSFTVSQPS SGGDGGEKKR GRPPGSSSKR LKLQALGSTG IGFTPHVLTV LAGEDVSSKI MALTHNGPRA VCVLSANGAI
201: SNVTLRQSAT SGGTVTYEGR FEILSLSGSF HLLENNGQRS RTGGLSVSLS SPDGNVLGGS VAGLLIAASP VQIVVGSFLP DGEKEPKQHV GQMGLSSPVL
301: PRVAPTQVLM TPSSPQSRGT MSESSCGGGH GSPIHQSTGG PYNNTINMPW K

Arabidopsis Description

AHL10AT-hook motif nuclear-localized protein 10 [Source:UniProtKB/Swiss-Prot;Acc:O22812]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.