Factsheet for VIT_15s0048g00870.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH00569	Soybean	cytosol, peroxisome, plastid	64.67	63.91
KRH76268	Soybean	cytosol, nucleus, plastid	65.27	63.01
KRH40594	Soybean	nucleus	63.47	62.91
KRH65263	Soybean	cytosol, nucleus, plastid	64.97	62.72
VIT_02s0025g05130.t01	Wine grape	cytosol, nucleus, peroxisome	59.88	60.61
PGSC0003DMT400033227	Potato	cytosol, nucleus, peroxisome	57.48	57.83
Solyc01g091370.2.1	Tomato	nucleus	54.19	56.92
VIT_16s0022g01810.t01	Wine grape	cytosol, nucleus, peroxisome	56.29	53.56
Bra037321.1-P	Field mustard	nucleus	48.2	50.95
CDY07238	Canola	nucleus	48.2	50.95
CDY07239	Canola	plasma membrane	35.03	50.65
AT4G00200.2	Thale cress	nucleus	48.2	50.63
Zm00001d015090_P001	Maize	extracellular	39.22	49.43
HORVU0Hr1G015180.2	Barley	cytosol, extracellular	34.43	48.73
KXG29351	Sorghum	plastid	47.01	41.87
VIT_18s0122g00700.t01	Wine grape	nucleus	43.41	41.08
VIT_15s0046g02930.t01	Wine grape	nucleus, plastid	41.32	40.0
TraesCS6B01G114000.1	Wheat	cytosol, nucleus, peroxisome	46.11	39.39
TraesCS6A01G083100.1	Wheat	cytosol, nucleus, peroxisome	45.81	38.64
TraesCS6D01G076900.1	Wheat	nucleus	45.51	38.38
Os02t0125200-00	Rice	mitochondrion	41.62	37.87
VIT_02s0025g03580.t01	Wine grape	nucleus	38.62	37.28
VIT_08s0007g04020.t01	Wine grape	nucleus	39.52	36.57
VIT_02s0012g00900.t01	Wine grape	nucleus	38.32	36.26
VIT_14s0081g00620.t01	Wine grape	nucleus	31.44	29.41

Protein Annotations

EntrezGene:100262627	wikigene:100262627	Gene3D:3.30.1330.80	MapMan:35.1	InterPro:AT_hook_DNA-bd_motif	ProteinID:CBI38857
ProteinID:CBI38857.3	UniProt:D7U7S8	EMBL:FN596739	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	InterPro:IPR005175	EntrezGene:LOC100262627	wikigene:LOC100262627	PFAM:PF02178	PFAM:PF03479
InterPro:PPC_dom	PFscan:PS51742	PANTHER:PTHR31500	PANTHER:PTHR31500:SF15	SMART:SM00384	SUPFAM:SSF117856
UniParc:UPI00015CB1F0	ArrayExpress:VIT_15s0048g00870	EnsemblPlantsGene:VIT_15s0048g00870	EnsemblPlants:VIT_15s0048g00870.t01	RefSeq:XP_002273440	RefSeq:XP_002273440.2
RefSeq:XP_010661642.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr15:+:15035239..15043545

Molecular Weight (calculated)

34254.5 Da

IEP (calculated)

10.210

GRAVY (calculated)

-0.310

Length

334 amino acids

Sequence
(BLAST)

001: MEGREGMTSG VTVIGAEAPS DYEMVARTEN PSQIAGSPAV DASPVSVGFT GTVGKKKRGR PRKYQPDGMA SMTLSPMPIS SSAPLSGNFS SGKRGRGRPV
101: GSESKQKQKV GSENSGNWSA ISDGVNFTPH IITVNAGEDV TMKLISFSQQ GPRAVCILSA NGVISNVTLR QQDSSGGTLT YEGRFEILSL TGSFVPTESG
201: GTRNRAGGMS VSLASPDGRV VGGGVAGLLI AASPVLVVVG SFLPDNAPVQ KPKKMKSVSA QTATPVSVQT TTPPVVTSTP KEEGVGGQGQ PSSSALKPDI
301: ASPSSIQREN WASMQSMQDS RKSGTDINIS LPGG

Best Arabidopsis Sequence Match ( AT4G12080.1 )
(BLAST)

001: MVLNMESTGE AVRSTTGNDG GITVVRSDAP SDFHVAQRSE SSNQSPTSVT PPPPQPSSHH TAPPPLQIST VTTTTTTAAM EGISGGLMKK KRGRPRKYGP
101: DGTVVALSPK PISSAPAPSH LPPPSSHVID FSASEKRSKV KPTNSFNRTK YHHQVENLGE WAPCSVGGNF TPHIITVNTG EDVTMKIISF SQQGPRSICV
201: LSANGVISSV TLRQPDSSGG TLTYEGRFEI LSLSGSFMPN DSGGTRSRTG GMSVSLASPD GRVVGGGLAG LLVAASPVQV VVGSFLAGTD HQDQKPKKNK
301: HDFMLSSPTA AIPISSAADH RTIHSVSSLP VNNNTWQTSL ASDPRNKHTD INVNVT

Arabidopsis Description

AHL1ATAHL1 [Source:UniProtKB/TrEMBL;Acc:A0A178V7H8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.