Subcellular Localization
min:
: max
Winner_takes_all: cytosol, nucleus, peroxisome
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
- peroxisome 1
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
PPI
Inferred distinct locusB in Crop
locusB | locations |
---|---|
VIT_02s0025g05130.t01 | |
VIT_16s0022g01810.t01 | nucleus |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
KRH34345 | Soybean | nucleus | 61.25 | 65.15 |
KRG92455 | Soybean | nucleus | 60.68 | 64.55 |
Solyc03g007150.2.1 | Tomato | nucleus | 59.54 | 64.31 |
VIT_02s0025g05130.t01 | Wine grape | cytosol, nucleus, peroxisome | 59.54 | 63.33 |
PGSC0003DMT400071865 | Potato | plastid | 54.42 | 62.01 |
KRH09229 | Soybean | nucleus | 59.26 | 60.47 |
PGSC0003DMT400079651 | Potato | nucleus | 59.26 | 60.12 |
KRH38723 | Soybean | nucleus | 57.55 | 58.72 |
Solyc06g035430.2.1 | Tomato | nucleus | 56.41 | 57.23 |
VIT_15s0048g00870.t01 | Wine grape | nucleus | 53.56 | 56.29 |
GSMUA_Achr1P19840_001 | Banana | nucleus | 55.56 | 51.18 |
GSMUA_Achr7P06500_001 | Banana | cytosol, plasma membrane, plastid | 48.43 | 50.6 |
GSMUA_AchrUn_... | Banana | cytosol, nucleus, plastid | 49.57 | 45.55 |
Os08t0118000-01 | Rice | nucleus | 47.58 | 44.89 |
GSMUA_Achr2P03170_001 | Banana | cytosol, peroxisome, plasma membrane | 49.0 | 44.1 |
VIT_18s0122g00700.t01 | Wine grape | nucleus | 42.45 | 42.21 |
KXG24283 | Sorghum | plastid | 46.44 | 41.48 |
CDX94457 | Canola | nucleus | 44.16 | 41.01 |
TraesCS7B01G215600.1 | Wheat | plastid | 45.58 | 40.61 |
HORVU7Hr1G075040.1 | Barley | plastid | 45.3 | 40.46 |
Bra019174.1-P | Field mustard | nucleus | 45.58 | 40.4 |
CDX92693 | Canola | nucleus | 45.3 | 40.15 |
CDY49703 | Canola | nucleus | 45.58 | 40.1 |
AT4G25320.1 | Thale cress | nucleus | 46.15 | 40.1 |
TraesCS7D01G312100.1 | Wheat | plastid | 45.3 | 40.05 |
VIT_15s0046g02930.t01 | Wine grape | nucleus, plastid | 39.32 | 40.0 |
TraesCS7A01G315100.1 | Wheat | plastid | 45.3 | 39.95 |
AT5G51590.1 | Thale cress | nucleus | 47.58 | 39.86 |
CDX89422 | Canola | nucleus | 43.59 | 39.84 |
Bra013886.1-P | Field mustard | nucleus | 43.02 | 39.63 |
CDY38874 | Canola | nucleus | 47.01 | 39.01 |
Bra029164.1-P | Field mustard | nucleus | 47.01 | 38.92 |
Zm00001d049661_P001 | Maize | cytosol, peroxisome, plasma membrane | 43.3 | 38.87 |
CDY32624 | Canola | nucleus | 46.44 | 38.44 |
CDY00488 | Canola | nucleus | 46.44 | 38.0 |
VIT_08s0007g04020.t01 | Wine grape | nucleus | 39.03 | 37.95 |
Bra028265.1-P | Field mustard | nucleus | 46.15 | 37.76 |
CDY16785 | Canola | nucleus | 42.17 | 37.76 |
Bra035899.1-P | Field mustard | nucleus | 42.17 | 37.76 |
CDX87241 | Canola | nucleus | 41.88 | 37.6 |
CDX91598 | Canola | nucleus | 44.16 | 36.99 |
CDX86910 | Canola | nucleus | 41.88 | 36.84 |
VIT_02s0012g00900.t01 | Wine grape | nucleus | 37.04 | 36.83 |
CDY00271 | Canola | nucleus | 42.17 | 36.72 |
Bra010070.1-P | Field mustard | nucleus | 42.17 | 36.72 |
Bra022555.1-P | Field mustard | nucleus | 43.59 | 36.52 |
CDY65097 | Canola | nucleus | 43.59 | 36.52 |
CDX99902 | Canola | nucleus | 45.58 | 36.45 |
AT5G62260.3 | Thale cress | nucleus | 41.6 | 36.14 |
VIT_02s0025g03580.t01 | Wine grape | nucleus | 34.76 | 35.26 |
CDY30710 | Canola | nucleus | 39.89 | 34.91 |
Bra029271.1-P | Field mustard | cytosol, nucleus, peroxisome | 39.32 | 34.41 |
VIT_14s0081g00620.t01 | Wine grape | nucleus | 30.48 | 29.97 |
Protein Annotations
EntrezGene:100254941 | wikigene:100254941 | Gene3D:3.30.1330.80 | MapMan:35.1 | ProteinID:CCB49263 | ProteinID:CCB49263.1 |
UniProt:F6HAK6 | EMBL:FN595506 | GO:GO:0000226 | GO:GO:0000910 | GO:GO:0003674 | GO:GO:0005488 |
GO:GO:0005515 | GO:GO:0007049 | GO:GO:0008017 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016043 |
InterPro:IPR005175 | EntrezGene:LOC100254941 | wikigene:LOC100254941 | PFAM:PF03479 | InterPro:PPC_dom | PFscan:PS51742 |
PANTHER:PTHR31500 | PANTHER:PTHR31500:SF18 | SUPFAM:SSF117856 | UniParc:UPI00015CBAF8 | ArrayExpress:VIT_16s0022g01810 | EnsemblPlantsGene:VIT_16s0022g01810 |
EnsemblPlants:VIT_16s0022g01810.t01 | RefSeq:XP_002268693 | RefSeq:XP_002268693.2 | RefSeq:XP_010662378.1 | SEG:seg | : |
Description
No Description!
Coordinates
chr16:-:14008044..14016080
Molecular Weight (calculated)
36126.7 Da
IEP (calculated)
9.851
GRAVY (calculated)
-0.367
Length
351 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGTEGINSG VTVKGEEAPD TYRVAARSEN PSEFGGSTMT AVSPVAAPAP TPATAPAPAP GSAPTPAPVS VAMPSSEMKK KRGRPRKYGP GGSLTMALSP
101: MPISSSIPLT GEFSAWKRGR GRPVDSFKKQ HKSESESAGE RVAYSVGANF TPHVITVNAG EDVTMKIISF SQQGSRAICI LSANGAISNV TLRQPNSSGG
201: TLTYEGRFEI LSLSGSFMPS ESGGTKSRSG GMSVSLAGPD GRVLGGGLAG LLVAAGPVQV LVGSFLPGHQ QEQKPKKQRI EPVQAAIPAT VNSMPREETL
301: GANGGPNLNL TSPSSFHGDT WASLNSMQGS RNLDIENKLP VSEGETKGPS Q
101: MPISSSIPLT GEFSAWKRGR GRPVDSFKKQ HKSESESAGE RVAYSVGANF TPHVITVNAG EDVTMKIISF SQQGSRAICI LSANGAISNV TLRQPNSSGG
201: TLTYEGRFEI LSLSGSFMPS ESGGTKSRSG GMSVSLAGPD GRVLGGGLAG LLVAAGPVQV LVGSFLPGHQ QEQKPKKQRI EPVQAAIPAT VNSMPREETL
301: GANGGPNLNL TSPSSFHGDT WASLNSMQGS RNLDIENKLP VSEGETKGPS Q
001: MVLNMESTGE AVRSTTGNDG GITVVRSDAP SDFHVAQRSE SSNQSPTSVT PPPPQPSSHH TAPPPLQIST VTTTTTTAAM EGISGGLMKK KRGRPRKYGP
101: DGTVVALSPK PISSAPAPSH LPPPSSHVID FSASEKRSKV KPTNSFNRTK YHHQVENLGE WAPCSVGGNF TPHIITVNTG EDVTMKIISF SQQGPRSICV
201: LSANGVISSV TLRQPDSSGG TLTYEGRFEI LSLSGSFMPN DSGGTRSRTG GMSVSLASPD GRVVGGGLAG LLVAASPVQV VVGSFLAGTD HQDQKPKKNK
301: HDFMLSSPTA AIPISSAADH RTIHSVSSLP VNNNTWQTSL ASDPRNKHTD INVNVT
101: DGTVVALSPK PISSAPAPSH LPPPSSHVID FSASEKRSKV KPTNSFNRTK YHHQVENLGE WAPCSVGGNF TPHIITVNTG EDVTMKIISF SQQGPRSICV
201: LSANGVISSV TLRQPDSSGG TLTYEGRFEI LSLSGSFMPN DSGGTRSRTG GMSVSLASPD GRVVGGGLAG LLVAASPVQV VVGSFLAGTD HQDQKPKKNK
301: HDFMLSSPTA AIPISSAADH RTIHSVSSLP VNNNTWQTSL ASDPRNKHTD INVNVT
Arabidopsis Description
AHL1ATAHL1 [Source:UniProtKB/TrEMBL;Acc:A0A178V7H8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.