Factsheet for Bra022555.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra022555.1-P
Bra028265.1-P
Bra029164.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G51590.1	Bra022555.1-P	AT5G51590.1	23335615
AT5G51590.1	Bra028265.1-P	AT5G51590.1	23335615
AT5G51590.1	Bra029164.1-P	AT5G51590.1	23335615

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY65097	Canola	nucleus	98.57	98.57
Bra029164.1-P	Field mustard	nucleus	77.57	76.65
Bra028265.1-P	Field mustard	nucleus	78.04	76.22
AT5G51590.1	Thale cress	nucleus	71.36	71.36
Bra019174.1-P	Field mustard	nucleus	57.52	60.86
Bra013886.1-P	Field mustard	nucleus	54.42	59.84
VIT_16s0022g01810.t01	Wine grape	cytosol, nucleus, peroxisome	36.52	43.59
KRH34345	Soybean	nucleus	33.17	42.12
Solyc03g007150.2.1	Tomato	nucleus	32.46	41.85
KRG92455	Soybean	nucleus	32.94	41.82
Bra022946.1-P	Field mustard	nucleus	25.3	40.46
PGSC0003DMT400071865	Potato	plastid	29.59	40.26
KRH09229	Soybean	nucleus	32.94	40.12
Bra010070.1-P	Field mustard	nucleus	38.19	39.7
Bra035899.1-P	Field mustard	nucleus	36.99	39.54
KRH38723	Soybean	nucleus	32.22	39.24
PGSC0003DMT400079651	Potato	nucleus	32.22	39.02
Bra029271.1-P	Field mustard	cytosol, nucleus, peroxisome	36.99	38.65
GSMUA_Achr7P06500_001	Banana	cytosol, plasma membrane, plastid	30.55	38.1
Bra037321.1-P	Field mustard	nucleus	28.4	37.66
Bra013646.1-P	Field mustard	nucleus	26.73	36.72
Solyc06g035430.2.1	Tomato	nucleus	30.31	36.71
GSMUA_Achr1P19840_001	Banana	nucleus	33.17	36.48
Bra019359.1-P	Field mustard	nucleus	28.4	36.17
Bra033121.1-P	Field mustard	nucleus	25.78	34.84
GSMUA_AchrUn_...	Banana	cytosol, nucleus, plastid	31.26	34.29
Bra021865.1-P	Field mustard	nucleus	27.45	32.86
GSMUA_Achr2P03170_001	Banana	cytosol, peroxisome, plasma membrane	30.55	32.82
Os08t0118000-01	Rice	nucleus	29.12	32.8
HORVU7Hr1G075040.1	Barley	plastid	29.59	31.55
TraesCS7B01G215600.1	Wheat	plastid	29.59	31.47
TraesCS7D01G312100.1	Wheat	plastid	29.59	31.23
Zm00001d049661_P001	Maize	cytosol, peroxisome, plasma membrane	29.12	31.2
TraesCS7A01G315100.1	Wheat	plastid	29.59	31.16
Bra025511.1-P	Field mustard	nucleus	20.53	31.05
KXG24283	Sorghum	plastid	29.12	31.04
Bra007595.1-P	Field mustard	nucleus	24.34	29.91
Bra014444.1-P	Field mustard	nucleus	23.63	29.73
Bra027642.1-P	Field mustard	nucleus	26.97	29.66
Bra039309.1-P	Field mustard	nucleus	24.11	29.62
Bra027801.1-P	Field mustard	nucleus	26.01	29.07
Bra025717.1-P	Field mustard	nucleus	20.05	27.72
Bra003446.1-P	Field mustard	nucleus	21.48	26.55
Bra025716.1-P	Field mustard	nucleus	16.95	26.39
Bra025718.1-P	Field mustard	nucleus, plastid	17.9	24.67
Bra017536.1-P	Field mustard	nucleus	20.76	24.65
Bra040133.1-P	Field mustard	nucleus	22.43	24.54
Bra009999.1-P	Field mustard	nucleus	21.72	24.46
Bra021027.1-P	Field mustard	nucleus	23.63	24.15
Bra013270.1-P	Field mustard	nucleus	24.34	23.94
Bra020612.1-P	Field mustard	nucleus	20.05	23.86

Protein Annotations

EnsemblPlants:Bra022555.1	EnsemblPlants:Bra022555.1-P	EnsemblPlantsGene:Bra022555	Gene3D:3.30.1330.80	InterPro:IPR005175	InterPro:PPC_dom
PANTHER:PTHR31500	PANTHER:PTHR31500:SF18	PFAM:PF03479	PFscan:PS51742	SEG:seg	SUPFAM:SSF117856
UniParc:UPI00025471A7	UniProt:M4E1A7	MapMan:35.1	:	:	:

Description

AT5G51590 (E=7e-111) | DNA-binding protein-related

Coordinates

chrA02:+:8971022..8973076

Molecular Weight (calculated)

43882.8 Da

IEP (calculated)

4.791

GRAVY (calculated)

-0.518

Length

419 amino acids

Sequence
(BLAST)

001: MDEREGTSSS SNSNNNITSF GLNQHVAPPP PNSGVYQMGP PRSENPNPFP AGLPNTNAAS ASASAVAATA PENAASPFSL TMPVGNSSSE LKMKKRGRPR
101: KYNPDGPLAV TLSPMPISSS VPLTTGFAPP QRGGRGQGRG RERGQARVDP PSNNNRLTNP QMFGFNNSSP VVGTSEVVCA SFTPHVLTVN VGEDVTMKIM
201: TFSQQGSRAI CILSGNGAVS SVTLRQSFTS AGTLTYEGHF EILSLTGSFI TSETGGIRSR AGGMSVSLSG PDGHVFGGGL SGLLLAAGPV QVTVGTFEAG
301: KEEPQHQQMQ NLRRERLGIP MTTQDSNISF GGGSAEDPKA RYGLNKPVVI QAPPVSAPPV SLPHEPNTNA AQGYYTNNTA NQIRDLFTSL PGEDDEDFEG
401: EDDDEEFGSD SESDTEVPN

Best Arabidopsis Sequence Match ( AT5G51590.1 )
(BLAST)

001: MEEREGTNIN NIPTSFGLKQ HETPLPPPGY PPRSENPNLF PVGQSSTSSA AAAVKPSENV APPFSLTMPV ENSSSELKKK RGRPRKYNPD GSLAVTLSPM
101: PISSSVPLTS EFGSRKRGRG RGRGRGRGRG RGQGQGSREP NNNNNDNNWL KNPQMFEFNN NTPTSGGGGP AEIVSPSFTP HVLTVNAGED VTMKIMTFSQ
201: QGSRAICILS ANGPISNVTL RQSMTSGGTL TYEGHFEILS LTGSFIPSES GGTRSRAGGM SVSLAGQDGR VFGGGLAGLF IAAGPVQVMV GSFIAGQEES
301: QQQQQQIKKQ RRERLGIPTT TQASNISFGG SAEDPKARYG LNKPVVIQPP PVSAPPVSFS HEPSTNTVHG YYANNTANHI KDLFSSLPGE DREEDEDDLE
401: GEDDEEFGGH SESDTEVPS

Arabidopsis Description

AHL4AT-hook motif nuclear-localized protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHM5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.