Factsheet for Bra025718.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
plastid 2
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra003446.1-P
Bra006876.1-P
Bra007595.1-P
Bra012837.1-P
Bra014444.1-P
Bra027642.1-P
Bra027801.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G17950.1	Bra027642.1-P	AT1G63470.1	21798944
AT4G17950.1	Bra027801.1-P	AT1G63470.1	21798944
AT4G17950.1	Bra006876.1-P	AT3G51780.1	21798944
AT4G17950.1	Bra012837.1-P	AT3G51780.1	21798944
AT4G17950.1	Bra003446.1-P	AT3G61310.1	21798944
AT4G17950.1	Bra007595.1-P	AT3G61310.1	21798944
AT4G17950.1	Bra014444.1-P	AT3G61310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY26691	Canola	cytosol, plastid	98.03	95.82
Bra025717.1-P	Field mustard	nucleus	70.07	70.3
Bra025716.1-P	Field mustard	nucleus	58.22	65.8
Bra021027.1-P	Field mustard	nucleus	51.64	38.29
AT4G17950.1	Thale cress	nucleus	54.28	37.59
GSMUA_Achr5P03370_001	Banana	mitochondrion, plastid	21.05	33.68
Bra013270.1-P	Field mustard	nucleus	46.38	33.1
Os10t0572900-02	Rice	nucleus	26.97	32.67
Bra017536.1-P	Field mustard	nucleus	36.51	31.44
Solyc04g053090.1.1	Tomato	plastid	17.43	31.36
Bra022946.1-P	Field mustard	nucleus	25.99	30.15
Solyc04g053100.1.1	Tomato	plastid	16.12	29.52
VIT_02s0012g00900.t01	Wine grape	nucleus	34.21	29.46
HORVU7Hr1G065300.2	Barley	mitochondrion, plastid	17.76	28.57
HORVU2Hr1G105800.13	Barley	cytosol, vacuole	28.62	28.34
PGSC0003DMT400052826	Potato	nucleus	32.57	27.5
KRH58200	Soybean	nucleus	31.91	26.8
GSMUA_Achr4P27240_001	Banana	cytosol, extracellular, nucleus, plastid	30.92	26.7
OQU82226	Sorghum	plastid	30.26	26.51
KRH04337	Soybean	nucleus	30.92	26.4
KRH28286	Soybean	plastid	28.62	25.66
Os04t0589900-01	Rice	nucleus	31.58	25.33
KRH77206	Soybean	nucleus	27.96	25.15
Bra037321.1-P	Field mustard	nucleus	25.99	25.0
Bra014444.1-P	Field mustard	nucleus	27.3	24.92
GSMUA_Achr2P09840_001	Banana	nucleus	28.95	24.65
Bra007595.1-P	Field mustard	nucleus	27.3	24.34
Zm00001d026036_P001	Maize	nucleus	31.25	23.63
Bra033121.1-P	Field mustard	nucleus	24.01	23.55
Bra021865.1-P	Field mustard	nucleus	26.97	23.43
TraesCS2A01G449500.1	Wheat	plastid	31.58	23.41
TraesCS2B01G470900.1	Wheat	cytosol, nucleus, peroxisome, plastid	31.58	23.3
TraesCS2D01G448900.1	Wheat	cytosol, nucleus, peroxisome, plastid	31.25	23.06
Bra019359.1-P	Field mustard	nucleus	24.67	22.8
Solyc08g006950.2.1	Tomato	nucleus	28.95	22.51
Zm00001d030053_P003	Maize	plastid	30.59	22.3
Bra013646.1-P	Field mustard	nucleus	22.37	22.3
Bra039309.1-P	Field mustard	nucleus	25.0	22.29
Zm00001d047042_P004	Maize	cytosol, nucleus, plasma membrane	31.25	22.14
KXG38867	Sorghum	plastid	30.26	21.75
Bra003446.1-P	Field mustard	nucleus	24.01	21.53
Bra020612.1-P	Field mustard	nucleus	24.67	21.31
Bra009999.1-P	Field mustard	nucleus	25.66	20.97
Bra025511.1-P	Field mustard	nucleus	19.08	20.94
Bra040133.1-P	Field mustard	nucleus	26.32	20.89
TraesCS1B01G206100.2	Wheat	nucleus	30.26	20.4
TraesCS1A01G190900.1	Wheat	nucleus	30.26	20.26
TraesCS1D01G194900.2	Wheat	nucleus	30.26	20.26
Bra027642.1-P	Field mustard	nucleus	25.33	20.21
HORVU1Hr1G049980.12	Barley	nucleus	30.26	19.83
Bra013886.1-P	Field mustard	nucleus	24.01	19.16
Bra027801.1-P	Field mustard	nucleus	23.36	18.93
Bra035899.1-P	Field mustard	nucleus	24.34	18.88
Bra019174.1-P	Field mustard	nucleus	24.34	18.69
Bra010070.1-P	Field mustard	nucleus	24.34	18.36
Bra022555.1-P	Field mustard	nucleus	24.67	17.9
Bra029164.1-P	Field mustard	nucleus	24.67	17.69
Bra029271.1-P	Field mustard	cytosol, nucleus, peroxisome	23.03	17.46
Bra028265.1-P	Field mustard	nucleus	24.34	17.25

Protein Annotations

EnsemblPlants:Bra025718.1	EnsemblPlants:Bra025718.1-P	EnsemblPlantsGene:Bra025718	InterPro:IPR005175	InterPro:PPC_dom	PANTHER:PTHR31500
PFAM:PF03479	PFscan:PS51742	SEG:seg	SUPFAM:SSF117856	UniParc:UPI000253F533	UniProt:M4EAB0
MapMan:35.1	:	:	:	:	:

Description

AT4G17950 (E=2e-032) | DNA-binding family protein

Coordinates

chrA06:-:7460218..7461497

Molecular Weight (calculated)

31704.3 Da

IEP (calculated)

8.216

GRAVY (calculated)

-0.471

Length

304 amino acids

Sequence
(BLAST)

001: MDPKETHQQQ QQQNRNAAAA PYQGMHNRPS VGALSLRQPQ PRQAVMLDGS PYPVVAERRW RQLGIKQRDA PPDVNVNVID GGDSGGGANA GPPAKRKGRP
101: LGSRDKQPRK ASGGGGGGGG PLTAHVINVN AGEDIAIKLV EFMKQEPREV CILSASGVVS IAVVQSDNPL GFVKYEGLYV ITDLSGTFWN TESNDGGATV
201: TRTGNLRVSL AGPDCKVVCG CVCGMLVAGS QVEVTVGTFV REGVKLSSAS APANVSSLTG GGGPGLPQSQ GPSESSEEYD TTSLGNFTPQ PPHHRPLWPG
301: NNPQ

Best Arabidopsis Sequence Match ( AT4G17950.1 )
(BLAST)

001: MDSREIHHQQ QQQQQQQQQQ QQQQQHLQQQ QQPPPGMLMS HHNSYNRNPN AAAAVLMGHN TSTSQAMHQR LPFGGSMSPH QPQQHQYHHP QPQQQIDQKT
101: LESLGFDGSP SSVAATQQHS MRFGIDHQQV KKKRGRPRKY AADGGGGGGG GSNIALGLAP TSPLPSASNS YGGGNEGGGG GDSAGANANS SDPPAKRNRG
201: RPPGSGKKQL DALGGTGGVG FTPHVIEVKT GEDIATKILA FTNQGPRAIC ILSATGAVTN VMLRQANNSN PTGTVKYEGR FEIISLSGSF LNSESNGTVT
301: KTGNLSVSLA GHEGRIVGGC VDGMLVAGSQ VQVIVGSFVP DGRKQKQSAG RAQNTPEPAS APANMLSFGG VGGPGSPRSQ GQQHSSESSE ENESNSPLHR
401: RSNNNNSNNH GIFGNSTPQP LHQIPMQMYQ NLWPGNSPQ

Arabidopsis Description

AHL13AT-hook motif nuclear-localized protein 13 [Source:UniProtKB/Swiss-Prot;Acc:Q940I0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.