Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
21132161
nucleus: 28499913 |
msms PMID:
21132161
doi
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID:
28499913
doi
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH04337 | Soybean | nucleus | 83.7 | 85.11 |
| KRH77206 | Soybean | nucleus | 56.91 | 60.95 |
| KRH28286 | Soybean | plastid | 56.08 | 59.88 |
| VIT_02s0012g00900.t01 | Wine grape | nucleus | 57.18 | 58.64 |
| GSMUA_Achr5P03370_001 | Banana | mitochondrion, plastid | 27.07 | 51.58 |
| Os10t0572900-02 | Rice | nucleus | 35.08 | 50.6 |
| Solyc04g053090.1.1 | Tomato | plastid | 22.65 | 48.52 |
| GSMUA_Achr4P27240_001 | Banana | cytosol, extracellular, nucleus, plastid | 44.48 | 45.74 |
| Solyc04g053100.1.1 | Tomato | plastid | 20.17 | 43.98 |
| HORVU2Hr1G105800.13 | Barley | cytosol, vacuole | 36.74 | 43.32 |
| GSMUA_Achr2P09840_001 | Banana | nucleus | 41.16 | 41.74 |
| Os04t0589900-01 | Rice | nucleus | 43.37 | 41.42 |
| PGSC0003DMT400052826 | Potato | nucleus | 41.16 | 41.39 |
| HORVU7Hr1G065300.2 | Barley | mitochondrion, plastid | 21.27 | 40.74 |
| OQU82226 | Sorghum | plastid | 38.67 | 40.35 |
| CDY01503 | Canola | cytosol | 28.18 | 39.38 |
| AT5G46640.1 | Thale cress | nucleus | 40.88 | 38.34 |
| KRH05193 | Soybean | plastid | 15.47 | 38.1 |
| Zm00001d030053_P003 | Maize | plastid | 43.09 | 37.41 |
| Zm00001d026036_P001 | Maize | nucleus | 41.44 | 37.31 |
| Zm00001d047042_P004 | Maize | cytosol, nucleus, plasma membrane | 44.2 | 37.3 |
| KRH40471 | Soybean | nucleus | 34.81 | 36.95 |
| KXG38867 | Sorghum | plastid | 43.09 | 36.88 |
| CDX78814 | Canola | nucleus | 41.44 | 36.85 |
| KRH00715 | Soybean | nucleus | 34.81 | 36.84 |
| TraesCS2A01G449500.1 | Wheat | plastid | 41.44 | 36.59 |
| KRH48165 | Soybean | nucleus | 34.25 | 36.47 |
| AT4G17950.1 | Thale cress | nucleus | 44.2 | 36.45 |
| Bra021027.1-P | Field mustard | nucleus | 41.16 | 36.34 |
| CDY03203 | Canola | nucleus | 35.91 | 36.31 |
| CDY35172 | Canola | nucleus | 35.36 | 36.26 |
| Bra017536.1-P | Field mustard | nucleus | 35.36 | 36.26 |
| KRH65066 | Soybean | nucleus | 33.98 | 36.18 |
| TraesCS2D01G448900.1 | Wheat | cytosol, nucleus, peroxisome, plastid | 41.16 | 36.16 |
| TraesCS2B01G470900.1 | Wheat | cytosol, nucleus, peroxisome, plastid | 41.16 | 36.16 |
| KRH76268 | Soybean | cytosol, nucleus, plastid | 34.53 | 36.13 |
| KRH65263 | Soybean | cytosol, nucleus, plastid | 34.25 | 35.84 |
| CDY68252 | Canola | nucleus | 29.28 | 35.69 |
| CDY08882 | Canola | nucleus | 42.54 | 35.4 |
| KRH60876 | Soybean | nucleus | 34.81 | 35.29 |
| CDY41028 | Canola | nucleus, plastid | 24.03 | 35.08 |
| CDY44500 | Canola | nucleus | 40.61 | 35.0 |
| Bra025716.1-P | Field mustard | nucleus | 25.97 | 34.94 |
| KRH51558 | Soybean | nucleus | 34.25 | 34.93 |
| KRH00569 | Soybean | cytosol, peroxisome, plastid | 32.6 | 34.91 |
| KRH34345 | Soybean | nucleus | 31.77 | 34.85 |
| CDX76549 | Canola | nucleus | 42.27 | 34.77 |
| KRH40594 | Soybean | nucleus | 32.32 | 34.72 |
| TraesCS1B01G206100.2 | Wheat | nucleus | 43.09 | 34.59 |
| CDY41027 | Canola | cytosol | 25.41 | 34.59 |
| TraesCS1A01G190900.1 | Wheat | nucleus | 43.37 | 34.58 |
| Solyc08g006950.2.1 | Tomato | nucleus | 37.29 | 34.53 |
| CDY26693 | Canola | plastid | 25.69 | 34.44 |
| TraesCS1D01G194900.2 | Wheat | nucleus | 43.09 | 34.36 |
| CDY26692 | Canola | nucleus | 28.45 | 33.99 |
| Bra025717.1-P | Field mustard | nucleus | 28.45 | 33.99 |
| KRH57315 | Soybean | nucleus | 30.66 | 33.95 |
| KRG92455 | Soybean | nucleus | 30.94 | 33.94 |
| HORVU1Hr1G049980.12 | Barley | nucleus | 43.37 | 33.84 |
| KRH04046 | Soybean | nucleus | 30.39 | 33.23 |
| CDY26694 | Canola | cytosol, plastid | 23.76 | 32.82 |
| KRH27929 | Soybean | nucleus | 31.77 | 32.67 |
| KRH09229 | Soybean | nucleus | 30.39 | 31.98 |
| Bra025718.1-P | Field mustard | nucleus, plastid | 26.8 | 31.91 |
| CDY26691 | Canola | cytosol, plastid | 27.35 | 31.83 |
| KRH38723 | Soybean | nucleus | 30.11 | 31.69 |
| KRH59866 | Soybean | nucleus | 30.66 | 31.53 |
| KRH77536 | Soybean | nucleus | 30.94 | 31.37 |
| CDY01506 | Canola | nucleus | 25.97 | 31.23 |
| Bra013270.1-P | Field mustard | nucleus | 36.46 | 30.99 |
| KRH41165 | Soybean | nucleus | 30.11 | 30.97 |
| KRH68809 | Soybean | nucleus | 29.28 | 30.64 |
| KRG97062 | Soybean | nucleus | 30.11 | 30.19 |
| KRH20019 | Soybean | nucleus | 30.94 | 29.55 |
| KRH32644 | Soybean | plastid | 30.11 | 27.53 |
| KRH25156 | Soybean | cytosol | 19.61 | 27.31 |
| KRH30520 | Soybean | nucleus | 25.69 | 25.14 |
Protein Annotations
| EntrezGene:100789717 | Gene3D:3.30.1330.80 | MapMan:35.1 | EMBL:ACUP02003232 | InterPro:AT_hook_DNA-bd_motif | EnsemblPlantsGene:GLYMA_05G111800 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | UniProt:I1K2J3 | InterPro:IPR005175 |
| EnsemblPlants:KRH58200 | ProteinID:KRH58200 | ProteinID:KRH58200.1 | PFAM:PF03479 | InterPro:PPC_dom | PFscan:PS51742 |
| PANTHER:PTHR31500 | PANTHER:PTHR31500:SF17 | SMART:SM00384 | SUPFAM:SSF117856 | UniParc:UPI0001BA80F8 | SEG:seg |
Description
hypothetical protein
Coordinates
chr5:-:29745228..29750532
Molecular Weight (calculated)
36731.2 Da
IEP (calculated)
9.421
GRAVY (calculated)
-0.356
Length
362 amino acids
Sequence
(BLAST)
(BLAST)
001: MDAREPLRPP PPTIMAGPTS YGSANIGPNS SATVSAMLAP ATAQFPFAAV PQQHQPPPSS EPFPASAYDG SSSPMKACSL AKKKRGRPRK YSPDGNIALR
101: LAPTHASPPA AASGGGGGGD SAGMASADAP AKKHRGRPPG SGKKQLDALG AGGVGFTPHV ILVESGEDIT AKIMAFSQQG PRTVCILSAI GAIGNVTLQQ
201: SAMTGGIATY EGRFEIISLS GSLQQSENNS ERSRTCTLNV TLAGSDGRVL GGGVAGTLIA ASTVQVIVGS FIADAKKSSS NALKSGSSSA PPPQMLTFGS
301: SMTPNSPTSQ GPSTESSEEQ DHSPFCRGPG PGSGHGLYNN ASQPVHNMPM YHHPLWAGQS HQ
101: LAPTHASPPA AASGGGGGGD SAGMASADAP AKKHRGRPPG SGKKQLDALG AGGVGFTPHV ILVESGEDIT AKIMAFSQQG PRTVCILSAI GAIGNVTLQQ
201: SAMTGGIATY EGRFEIISLS GSLQQSENNS ERSRTCTLNV TLAGSDGRVL GGGVAGTLIA ASTVQVIVGS FIADAKKSSS NALKSGSSSA PPPQMLTFGS
301: SMTPNSPTSQ GPSTESSEEQ DHSPFCRGPG PGSGHGLYNN ASQPVHNMPM YHHPLWAGQS HQ
001: MDSREIHHQQ QQQQQQQQQQ QQQQQHLQQQ QQPPPGMLMS HHNSYNRNPN AAAAVLMGHN TSTSQAMHQR LPFGGSMSPH QPQQHQYHHP QPQQQIDQKT
101: LESLGFDGSP SSVAATQQHS MRFGIDHQQV KKKRGRPRKY AADGGGGGGG GSNIALGLAP TSPLPSASNS YGGGNEGGGG GDSAGANANS SDPPAKRNRG
201: RPPGSGKKQL DALGGTGGVG FTPHVIEVKT GEDIATKILA FTNQGPRAIC ILSATGAVTN VMLRQANNSN PTGTVKYEGR FEIISLSGSF LNSESNGTVT
301: KTGNLSVSLA GHEGRIVGGC VDGMLVAGSQ VQVIVGSFVP DGRKQKQSAG RAQNTPEPAS APANMLSFGG VGGPGSPRSQ GQQHSSESSE ENESNSPLHR
401: RSNNNNSNNH GIFGNSTPQP LHQIPMQMYQ NLWPGNSPQ
101: LESLGFDGSP SSVAATQQHS MRFGIDHQQV KKKRGRPRKY AADGGGGGGG GSNIALGLAP TSPLPSASNS YGGGNEGGGG GDSAGANANS SDPPAKRNRG
201: RPPGSGKKQL DALGGTGGVG FTPHVIEVKT GEDIATKILA FTNQGPRAIC ILSATGAVTN VMLRQANNSN PTGTVKYEGR FEIISLSGSF LNSESNGTVT
301: KTGNLSVSLA GHEGRIVGGC VDGMLVAGSQ VQVIVGSFVP DGRKQKQSAG RAQNTPEPAS APANMLSFGG VGGPGSPRSQ GQQHSSESSE ENESNSPLHR
401: RSNNNNSNNH GIFGNSTPQP LHQIPMQMYQ NLWPGNSPQ
Arabidopsis Description
AHL13AT-hook motif nuclear-localized protein 13 [Source:UniProtKB/Swiss-Prot;Acc:Q940I0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.