CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 4
plastid 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH00715
KRH05193
KRH27929
KRH40471
KRH41165
KRH48165
KRH49429
KRH59866
KRH65066
KRH65641
KRH75994
KRH77536

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G17950.1	KRH05193	AT1G63470.1	21798944
AT4G17950.1	KRH27929	AT1G63470.1	21798944
AT4G17950.1	KRH41165	AT1G63470.1	21798944
AT4G17950.1	KRH59866	AT1G63470.1	21798944
AT4G17950.1	KRH77536	AT1G63470.1	21798944
AT4G17950.1	KRH49429	AT3G51780.1	21798944
AT4G17950.1	KRH65641	AT3G51780.1	21798944
AT4G17950.1	KRH75994	AT3G51780.1	21798944
AT4G17950.1	KRH00715	AT3G61310.1	21798944
AT4G17950.1	KRH40471	AT3G61310.1	21798944
AT4G17950.1	KRH48165	AT3G61310.1	21798944
AT4G17950.1	KRH65066	AT3G61310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH77206	Soybean	nucleus	88.2	88.46
KRH04337	Soybean	nucleus	59.0	56.18
KRH58200	Soybean	nucleus	59.88	56.08
VIT_02s0012g00900.t01	Wine grape	nucleus	53.98	51.84
GSMUA_Achr5P03370_001	Banana	mitochondrion, plastid	24.48	43.68
Os10t0572900-02	Rice	nucleus	31.86	43.03
GSMUA_Achr4P27240_001	Banana	cytosol, extracellular, nucleus, plastid	41.3	39.77
HORVU2Hr1G105800.13	Barley	cytosol, vacuole	34.51	38.11
Solyc04g053090.1.1	Tomato	plastid	18.29	36.69
Os04t0589900-01	Rice	nucleus	41.0	36.68
GSMUA_Achr2P09840_001	Banana	nucleus	38.35	36.41
OQU82226	Sorghum	plastid	36.87	36.02
KRH05193	Soybean	plastid	15.34	35.37
PGSC0003DMT400052826	Potato	nucleus	37.46	35.28
CDY01503	Canola	cytosol	26.84	35.14
CDX78814	Canola	nucleus	41.59	34.64
HORVU7Hr1G065300.2	Barley	mitochondrion, plastid	19.17	34.39
Solyc04g053100.1.1	Tomato	plastid	16.81	34.34
AT5G46640.1	Thale cress	nucleus	38.64	33.94
KRH60876	Soybean	nucleus	35.1	33.33
KRH51558	Soybean	nucleus	34.51	32.96
KRH48165	Soybean	nucleus	33.04	32.94
AT4G17950.1	Thale cress	nucleus	42.48	32.8
Bra021027.1-P	Field mustard	nucleus	39.53	32.68
CDY08882	Canola	nucleus	41.59	32.41
CDY44500	Canola	nucleus	40.12	32.38
KRH65066	Soybean	nucleus	32.45	32.35
CDY41027	Canola	cytosol	25.37	32.33
CDY41028	Canola	nucleus, plastid	23.6	32.26
CDY26693	Canola	plastid	25.66	32.22
Zm00001d026036_P001	Maize	nucleus	38.05	32.09
KRH76268	Soybean	cytosol, nucleus, plastid	32.74	32.08
CDY35172	Canola	nucleus	33.33	32.01
Bra017536.1-P	Field mustard	nucleus	33.33	32.01
Bra025716.1-P	Field mustard	nucleus	25.37	31.97
Zm00001d030053_P003	Maize	plastid	39.23	31.89
CDY03203	Canola	nucleus	33.63	31.84
CDX76549	Canola	nucleus	41.3	31.82
KRH40471	Soybean	nucleus	31.86	31.67
KRH65263	Soybean	cytosol, nucleus, plastid	32.15	31.5
KXG38867	Sorghum	plastid	39.23	31.44
TraesCS2B01G470900.1	Wheat	cytosol, nucleus, peroxisome, plastid	38.05	31.31
TraesCS2D01G448900.1	Wheat	cytosol, nucleus, peroxisome, plastid	38.05	31.31
KRH00715	Soybean	nucleus	31.56	31.29
TraesCS2A01G449500.1	Wheat	plastid	37.76	31.22
CDY26694	Canola	cytosol, plastid	23.89	30.92
KRH00569	Soybean	cytosol, peroxisome, plastid	30.68	30.77
Bra025717.1-P	Field mustard	nucleus	27.43	30.69
CDY26692	Canola	nucleus	27.43	30.69
KRH40594	Soybean	nucleus	30.38	30.56
Zm00001d047042_P004	Maize	cytosol, nucleus, plasma membrane	38.64	30.54
KRH34345	Soybean	nucleus	29.2	30.0
Solyc08g006950.2.1	Tomato	nucleus	34.51	29.92
KRG92455	Soybean	nucleus	28.91	29.7
KRH57315	Soybean	nucleus	28.61	29.66
CDY68252	Canola	nucleus	25.96	29.63
TraesCS1B01G206100.2	Wheat	nucleus	38.64	29.05
KRH04046	Soybean	nucleus	28.32	29.0
Bra013270.1-P	Field mustard	nucleus	36.28	28.87
TraesCS1A01G190900.1	Wheat	nucleus	38.64	28.85
TraesCS1D01G194900.2	Wheat	nucleus	38.64	28.85
Bra025718.1-P	Field mustard	nucleus, plastid	25.66	28.62
CDY26691	Canola	cytosol, plastid	26.25	28.62
KRH20019	Soybean	nucleus	31.86	28.5
HORVU1Hr1G049980.12	Barley	nucleus	38.64	28.23
KRH09229	Soybean	nucleus	28.61	28.2
KRH38723	Soybean	nucleus	28.61	28.2
CDY01506	Canola	nucleus	24.48	27.57
KRH59866	Soybean	nucleus	28.61	27.56
KRH41165	Soybean	nucleus	28.32	27.27
KRH27929	Soybean	nucleus	28.02	26.99
KRH32644	Soybean	plastid	30.68	26.26
KRH77536	Soybean	nucleus	27.14	25.77
KRH25156	Soybean	cytosol	19.17	25.0
KRH68809	Soybean	nucleus	25.07	24.57
KRG97062	Soybean	nucleus	25.37	23.82
KRH30520	Soybean	nucleus	23.89	21.89

Protein Annotations

EntrezGene:100789687	Gene3D:3.30.1330.80	MapMan:35.1	EMBL:ACUP02006743	InterPro:AT_hook_DNA-bd_motif	EnsemblPlantsGene:GLYMA_11G042900
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	InterPro:IPR005175	UniProt:K7LN06
EnsemblPlants:KRH28286	ProteinID:KRH28286	ProteinID:KRH28286.1	PFAM:PF03479	InterPro:PPC_dom	PFscan:PS51742
PANTHER:PTHR31500	PANTHER:PTHR31500:SF17	SMART:SM00384	SUPFAM:SSF117856	UniParc:UPI000233CE4D	SEG:seg

Description

hypothetical protein

Coordinates

chr11:+:3139534..3143800

Molecular Weight (calculated)

35396.4 Da

IEP (calculated)

8.469

GRAVY (calculated)

-0.569

Length

339 amino acids

Sequence
(BLAST)

001: MNSREQPQPQ QPPQPQPPNM TVGPTMYPSM LSPVTARFPF SSSSNNNPPP SEPLNNDTND NDNSAFEALK PCALAASESS KKKRGRPRKY SPDGNIALGL
101: GPTHAPASSA DPPAKKHRGR PPGSGKKQMD ALGIPGTGFT PHVITAEVGE DIAAKLVAFC EQGPRTVCTL SANGATRNVT IRAPDMPAGT VAYEGPFEII
201: SLKAATLQSD NNRMAALSVS LAGPDGRVLG GEVVGALTAA TAVQIVLGSF IADGKKSSSS YLKSGRSLTP SSQMLAFGAS RTPTTPTSQG PSTESSEDNE
301: NSHFSQGPGG PGLYDNNASQ PIHTMPMYQH QLWAGHTQQ

Best Arabidopsis Sequence Match ( AT4G17950.1 )
(BLAST)

001: MDSREIHHQQ QQQQQQQQQQ QQQQQHLQQQ QQPPPGMLMS HHNSYNRNPN AAAAVLMGHN TSTSQAMHQR LPFGGSMSPH QPQQHQYHHP QPQQQIDQKT
101: LESLGFDGSP SSVAATQQHS MRFGIDHQQV KKKRGRPRKY AADGGGGGGG GSNIALGLAP TSPLPSASNS YGGGNEGGGG GDSAGANANS SDPPAKRNRG
201: RPPGSGKKQL DALGGTGGVG FTPHVIEVKT GEDIATKILA FTNQGPRAIC ILSATGAVTN VMLRQANNSN PTGTVKYEGR FEIISLSGSF LNSESNGTVT
301: KTGNLSVSLA GHEGRIVGGC VDGMLVAGSQ VQVIVGSFVP DGRKQKQSAG RAQNTPEPAS APANMLSFGG VGGPGSPRSQ GQQHSSESSE ENESNSPLHR
401: RSNNNNSNNH GIFGNSTPQP LHQIPMQMYQ NLWPGNSPQ

Arabidopsis Description

AHL13AT-hook motif nuclear-localized protein 13 [Source:UniProtKB/Swiss-Prot;Acc:Q940I0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.