Factsheet for VIT_02s0012g00900.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_02s0025g03580.t01
VIT_04s0044g02000.t01
VIT_08s0058g00130.t01
VIT_15s0046g02930.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G17950.1	VIT_02s0025g03580.t01	AT1G63470.1	21798944
AT4G17950.1	VIT_04s0044g02000.t01	AT3G51780.1	21798944
AT4G17950.1	VIT_08s0058g00130.t01	AT3G51780.1	21798944
AT4G17950.1	VIT_15s0046g02930.t01	AT3G61310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P03370_001	Banana	mitochondrion, plastid	32.86	61.05
PGSC0003DMT400045147	Potato	plastid	56.09	60.0
Os10t0572900-02	Rice	nucleus	41.93	58.96
KRH58200	Soybean	nucleus	58.64	57.18
KRH04337	Soybean	nucleus	55.52	55.06
KRH28286	Soybean	plastid	51.84	53.98
KRH77206	Soybean	nucleus	50.42	52.66
Solyc08g077030.2.1	Tomato	nucleus	60.06	51.83
GSMUA_Achr4P27240_001	Banana	cytosol, extracellular, nucleus, plastid	49.58	49.72
HORVU2Hr1G105800.13	Barley	cytosol, vacuole	43.06	49.51
HORVU7Hr1G065300.2	Barley	mitochondrion, plastid	26.06	48.68
Os04t0589900-01	Rice	nucleus	51.56	48.02
VIT_18s0122g00700.t01	Wine grape	nucleus	47.59	47.59
GSMUA_Achr2P09840_001	Banana	nucleus	47.03	46.5
OQU82226	Sorghum	plastid	45.33	46.11
Zm00001d030053_P003	Maize	plastid	50.42	42.69
KXG38867	Sorghum	plastid	50.99	42.55
TraesCS2A01G449500.1	Wheat	plastid	49.01	42.2
Zm00001d047042_P004	Maize	cytosol, nucleus, plasma membrane	51.27	42.19
CDY01503	Canola	cytosol	30.88	42.08
TraesCS2B01G470900.1	Wheat	cytosol, nucleus, peroxisome, plastid	49.01	41.99
Zm00001d026036_P001	Maize	nucleus	47.59	41.79
TraesCS2D01G448900.1	Wheat	cytosol, nucleus, peroxisome, plastid	48.73	41.75
AT5G46640.1	Thale cress	nucleus	44.76	40.93
CDX78814	Canola	nucleus	46.18	40.05
VIT_15s0046g02930.t01	Wine grape	nucleus, plastid	39.09	40.0
TraesCS1B01G206100.2	Wheat	nucleus	50.99	39.91
VIT_02s0025g05130.t01	Wine grape	cytosol, nucleus, peroxisome	37.11	39.7
CDY03203	Canola	nucleus	40.23	39.66
TraesCS1D01G194900.2	Wheat	nucleus	50.99	39.65
TraesCS1A01G190900.1	Wheat	nucleus	50.99	39.65
Bra021027.1-P	Field mustard	nucleus	45.61	39.27
AT4G17950.1	Thale cress	nucleus	48.73	39.18
Bra017536.1-P	Field mustard	nucleus	39.09	39.09
CDY35172	Canola	nucleus	39.09	39.09
HORVU1Hr1G049980.12	Barley	nucleus	50.99	38.79
CDY08882	Canola	nucleus	47.31	38.39
VIT_15s0048g00870.t01	Wine grape	nucleus	36.26	38.32
CDY41027	Canola	cytosol	28.61	37.97
CDX76549	Canola	nucleus	47.31	37.95
CDY44500	Canola	nucleus	45.04	37.86
CDY26693	Canola	plastid	28.9	37.78
VIT_08s0007g04020.t01	Wine grape	nucleus	38.53	37.67
Bra025717.1-P	Field mustard	nucleus	32.29	37.62
CDY26692	Canola	nucleus	32.29	37.62
Bra025716.1-P	Field mustard	nucleus	28.61	37.55
CDY41028	Canola	nucleus, plastid	26.35	37.5
VIT_16s0022g01810.t01	Wine grape	cytosol, nucleus, peroxisome	36.83	37.04
VIT_02s0025g03580.t01	Wine grape	nucleus	36.26	36.99
CDY68252	Canola	nucleus	30.88	36.7
CDY26694	Canola	cytosol, plastid	27.2	36.64
CDY26691	Canola	cytosol, plastid	30.31	34.41
CDY01506	Canola	nucleus	29.18	34.22
Bra025718.1-P	Field mustard	nucleus, plastid	29.46	34.21
Bra013270.1-P	Field mustard	nucleus	41.08	34.04
VIT_14s0081g00620.t01	Wine grape	nucleus	30.59	30.25

Protein Annotations

EntrezGene:100245362	wikigene:100245362	Gene3D:3.30.1330.80	MapMan:35.1	InterPro:AT_hook_DNA-bd_motif	ProteinID:CBI33917
ProteinID:CBI33917.3	UniProt:D7TU02	EMBL:FN596247	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	InterPro:IPR005175	EntrezGene:LOC100245362	wikigene:LOC100245362	PFAM:PF03479	InterPro:PPC_dom
PFscan:PS51742	PANTHER:PTHR31500	PANTHER:PTHR31500:SF17	SMART:SM00384	SUPFAM:SSF117856	TIGR:TC56700
UniParc:UPI00015C90E2	ArrayExpress:VIT_02s0012g00900	EnsemblPlantsGene:VIT_02s0012g00900	EnsemblPlants:VIT_02s0012g00900.t01	unigene:Vvi.17960	RefSeq:XP_002281340
RefSeq:XP_002281340.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr2:-:6805526..6816934

Molecular Weight (calculated)

36522.3 Da

IEP (calculated)

9.814

GRAVY (calculated)

-0.429

Length

353 amino acids

Sequence
(BLAST)

001: MDSHEPQQPQ QQQHPPHGMM MGPNSYHTNM ANTSPMMNPN SAAIMQNNRF SFTSMVASKP VDSPYGDGSS TGLRPCGFNI EPAKKKRGRP RKYAPDGNIA
101: LGLAPTPIPS TAAHGDATGT PSSEPPAKRN RGRPPGSGKK QLDALGAAGV GFTPHVITVN VGEDIASKIM AFSQQGPRTV CILSANGAIC NVTLRQPAMS
201: GGTISYEGRF DIISLSGSFL LSEDNGSRHR TGGLSVSLAG SDGRVLGGGV AGMLTAATPV QVVVGSFIAD GKKTNTNQSG SSSAPPAQML NFGAPVVPAS
301: PSQGGSSESS DENGGSPLNR GPLPYNNVSQ PIHQMPMYAA MGWPNSTMKM LPN

Best Arabidopsis Sequence Match ( AT4G17950.1 )
(BLAST)

001: MDSREIHHQQ QQQQQQQQQQ QQQQQHLQQQ QQPPPGMLMS HHNSYNRNPN AAAAVLMGHN TSTSQAMHQR LPFGGSMSPH QPQQHQYHHP QPQQQIDQKT
101: LESLGFDGSP SSVAATQQHS MRFGIDHQQV KKKRGRPRKY AADGGGGGGG GSNIALGLAP TSPLPSASNS YGGGNEGGGG GDSAGANANS SDPPAKRNRG
201: RPPGSGKKQL DALGGTGGVG FTPHVIEVKT GEDIATKILA FTNQGPRAIC ILSATGAVTN VMLRQANNSN PTGTVKYEGR FEIISLSGSF LNSESNGTVT
301: KTGNLSVSLA GHEGRIVGGC VDGMLVAGSQ VQVIVGSFVP DGRKQKQSAG RAQNTPEPAS APANMLSFGG VGGPGSPRSQ GQQHSSESSE ENESNSPLHR
401: RSNNNNSNNH GIFGNSTPQP LHQIPMQMYQ NLWPGNSPQ

Arabidopsis Description

AHL13AT-hook motif nuclear-localized protein 13 [Source:UniProtKB/Swiss-Prot;Acc:Q940I0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.